4C0H


Conserved Protein Domain Family
CFIA_Pcf11

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pfam11526: CFIA_Pcf11 
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Subunit of cleavage factor IA Pcf11
Pcf11 is a subunit of an essential polyadenylation factor in Saccharomyces cerevisiae, CFIA. Pcf11 binds to Clp1, another subunit of CFIA whose interaction is responsible for maintaining a tight coupling between the Clp1 nucleotide binding subunit and the other components of the polyadenylation machinery.
Statistics
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PSSM-Id: 402911
View PSSM: pfam11526
Aligned: 35 rows
Threshold Bit Score: 71.3296
Threshold Setting Gi: 754412971
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4C0H_D         14 NLNTTTTrKNIQSRNWYLSDSQWAAFKDDEITSTKHKNDYTDPHANKNIDKSalnihadendegsv-dntlgsdrsnele 92   baker's yeast
CCE39793      380 NKKLTVKgGNIQSRDWYVDDYEWVKLSENKVGEQADSTTATDQSVDISVT------------------------------ 429  Candida parap...
EEQ41360      437 NKRSTNHkANIQSRTWYISQDEWVHFDESSLSEQAAAPVARAETAAAAP------------------------------- 485  Clavispora lu...
ESW98835      360 NKKLKDTgKQLYNRAWYLNDAKWIEFKEDEIVGYTSDTLETNRVVMKEALSEe--------------------------e 413  Ogataea parap...
XP_009026445  866 NKIEKTGsKSLKYRSWYPDLMEWIQLNDNNIVTSDYKPTDTNTNNSTAATTSltnapss--------------easkpqe 931  Helobdella ro...
XP_011275249  395 NNRLKES-KIVQARSWYIDDEDFVQFRDWDIFNGSNSNQDDSTQDDKPK------------------------------- 442  Wickerhamomyc...
CAZ82508      474 HQRMAESvKRGQNRSWYLGEEEWIKSRDDGEDSSSLAPNPNSHPNSGNNAIGvssssssnp-----------nsssnnpd 542  Perigord truffle
Q2GNV2        489 HQRMTDAeKRGQHRSWYVDESDWIHTREAIDTDYTHPPQDPSSTSALDDPTAasgsggahhsakpnstsaagaaaaaaaa 568  Chaetomium gl...
EGX52555      508 HQRIADSsKHAQFRSWYVGEEEWIKFREDEDDSNTMTSGQPQQGADVDTSTQe--------------------------a 561  Arthrobotrys ...
EEH03809      293 NQRMTEAsKRGQSRSWYLDEREWIKSREFDDDTGGPTGDSATSANGSMSDSTaaaa---------------------kks 351  Histoplasma c...
4C0H_D         93 IRGKYVVVPETSQDMAF 109  baker's yeast
CCE39793      430 TEAQYTIVPENDTNMNN 446  Candida parapsilosis
EEQ41360      486 TRAQYVVVPPSETNMNN 502  Clavispora lusitaniae ATCC 42720
ESW98835      414 VNKQIVAIPEDSDNETV 430  Ogataea parapolymorpha DL-1
XP_009026445  932 SKSLSVVIGATASDSAA 948  Helobdella robusta
XP_011275249  443 KEKKYVIVPEGG-DMNI 458  Wickerhamomyces ciferrii
CAZ82508      543 PKDQYVIISDPSKTRav 559  Perigord truffle
Q2GNV2        569 ARAPYIPVPEDSARVNN 585  Chaetomium globosum CBS 148.51
EGX52555      562 SSQNYIPAPNDAALSNL 578  Arthrobotrys oligospora ATCC 24927
EEH03809      352 SQKQWIHAPNDAAlrna 368  Histoplasma capsulatum G186AR
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