Conserved Protein Domain Family
DUF2828

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pfam11443: DUF2828 (This model is not part of the current CDD release)
Domain of unknown function (DUF2828)
This is a uncharacterised domain found in eukaryotes and viruses. According to structure predictions and comparison, this domain may have a alpha-helical fold closely related to the TROVE domain suggesting possible involvement in RNA binding.
Statistics
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PSSM-Id: 519712
Aligned: 61 rows
Threshold Bit Score: 438.218
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_013952296  94 TENADVAFRSTQNALVDLFFELEDVVS-GPRLKELLDAAWAVHPLITLKIIFNARSIH-LGKSSKNVFYRAAGWLATNHP 171
XP_003571020  52 TENSSPTFVSSGDPCLDFFFHVVPGTP-AASVASLLAAAWAADAPTALRLVANLRGVRgAGKSDREGFYAAALWLHARHP 130
Q67UP5        65 TENYSPTFASSGDPCLDFFFNVVPDTH-ASTVTSLLSAAWTAEPNTALRLACNLRGVRgTGKSDHEGFYATALWMHDHHP 143 Japanese rice
XP_003560369  64 TENNSPTFVSSGDPCLDFFFHVVPDTP-PSSVSSLLADAWAAEPTTALRLACNLRAVRgTGKSDREGFYAAALWMHETHP 142
XP_002437375  71 TENSSPTFVSSGDPCLDFFFHVVPGTP-AASVASLLADAWAAEPSTALRLACNLRGVRgTGKSDREGFYAAALWMHGCHP 149
RCV28018      54 rsaqPLAYASSGDPCVDFFFQVVPGVTsDADLAALLDVAWSRDALTALKLVCHLRGVRgLGKSDRDGFYAAALWMHARHP 133
XP_006646747  24 ppqcfhQMLSSGDPCLDFFFQVVPGATpATTLTQLLAAAWASNPLTALKLLCNLRAERgLGKADRDGFYAAALWMHDNHP 103
KQK11816      64 rlgraLSYTSSGDPCVDFFFQVVPGATaSADVASLLSVAWASDARTALRLVCHLRGVRgLGKSDREGFYAAALWMHANHP 143
XP_014758332  64 TENSSATYANSGNPCLDFFFQVVPDTP-PERVRELLAAAWAQDALTTLKLACNLRGVRgTGKSDREGFYAAALWIHTHHP 142
XP_004974573  60 TENNSATYASSGNACLDLFFQVVPDTP-PERVRQLVTVAWAHDPLTALKLVANLRGVRgTGKSDKEGFYAAALWLHERHP 138
XP_013952296 172 LTLVGNLRWLSRpiiekkarkegendsdegfikvekregdenavdrydvrygvSHGYWKDLLNILVLAMEKKLdvlenpk 251
XP_003571020 131 ATLARNAASLAA-----------------------------------------EFGYLKDLPELLHRIAHGGR------- 162
Q67UP5       144 KTLALNAPSVA------------------------------------------EFGYLKDLPELLHRIIHGGV------- 174 Japanese rice
XP_003560369 143 TTLALNAGPVA------------------------------------------DFGYLKDLPEILHRIIHGGV------- 173
XP_002437375 150 TTLALNAGPVA------------------------------------------EFGYLKDLPEILHRIIHGGV------- 180
RCV28018     134 LTLAANLANFA------------------------------------------RFGCLKDLPEILYLVLHGPR------- 164
XP_006646747 104 RTLLANLASFA------------------------------------------TFRCLKDLPEIIYRVLQGHR------- 134
KQK11816     144 LTLAANLDTFA------------------------------------------NFGCLKDPLEIVSRVLHGPR------- 174
XP_014758332 143 RTLACNVAALA------------------------------------------EFGYLKDFPELLFRLIHGPD------- 173
XP_004974573 139 KTLACNLPALA------------------------------------------EFGYLKDFPELLYRLIHGPD------- 169
XP_013952296 252 dvlnVENEDIKNAVLARrqkkrggvspstrgargargrggratisarraaaieaarqrakakemrgkpnrhvleeptvri 331
XP_003571020 163 ----STRTPGKK--ARLeaegrggfvcrgrgrgrfrgssgsrskp----------------------------------- 201
Q67UP5       175 ----STRTPPPARTRSYyssrrprkvrrdpat------------------------------------------------ 202 Japanese rice
XP_003560369 174 ----STRTPGKQ--ARLaaeedggfvhhvysasygnkggp---------------------------------------- 207
XP_002437375 181 ----STRTPGKK--ARLaalggfvvrsrdgshrrfvhnrpesrp------------------------------------ 218
RCV28018     165 -----EEDQRKGDGRRRrtkrr---------------------------------------------------------- 181
XP_006646747 135 ----HEHHHDHHDGQPDgprprlr-------------------------------------------------------- 154
KQK11816     175 ------DEREEADDAPRftrgrgg-------------------------------------------------------- 192
XP_014758332 174 ----VRKKARDNAAAEKtrrkekalrkqrealiaslagrkrareaapvlhkatfg------------------------- 224
XP_004974573 170 ----VRKLAKDNVATEKirrkvaevraarlagskrargdsaapqpaaapvladfvsaalsn------------------- 226
XP_013952296 332 gnpefaqqvaafeeaqaraeaalhraekrelkatqtthaleekmvhIGNLKLARH--RERDDRHEASMDRFNTNAVYRTL 409
XP_003571020 202 ------------------rreddsraprvgtaeervagslerdrelAAAARVSRR--SRRADAAARAVELYSRDPAYRAL 261
Q67UP5       203 -------------------------------raariaasqekhrkiSDQAAVERR--KKRAEAAARAVEMYARDPKYRFL 249 Japanese rice
XP_003560369 208 ------------------------lardpstrearvaasnerdqnfSAQASIERK--RKHAELAARVLERYARDPNYRLL 261
XP_002437375 219 -------------------rrkgnaprgaetrearvaaanerdrklSADAAVERR--KRRAEAAARAVDRYARDPKYRLL 277
RCV28018     182 ------------------------------------------rgvdEAKAAKERL--NKEAQLAQAALARYASDEAFRHL 217
XP_006646747 155 ---------------------------------------fkrrcvdHDHGKAARAilRKEAQLAQALLLRYDSDDNFRLL 195
KQK11816     193 ---------------------------------------skrcrgaRTATARARR--EKEAQHAQAVIARYGSDDKFRLL 231
XP_014758332 225 ---------dflsaalgnsniktpvkvvkdapvaekkpeamevdqkKKPARGMSKkvRKVAKVAVQSLETYYGDCAYRFL 295
XP_004974573 227 --------pktkskrsnksgagasaaaameteeevvveqkseamevdnkeipMTKgvRKVAKLAVQSLETYYGDGAYRFL 298
XP_013952296 410 HVTVARLFAEQLHSDLAALRDSDPKAkrGISLCAKWAPSHGNFHDRHTCIISSIAEILYPREsLSSav-----saSDNRE 484
XP_003571020 262 HDRTAELFAGLLAEDMRKLA-EGNVK--EFSLAAKWCPSLDSSYDRSTLLCEAIARRLFPRG-SSPelaededeaELSDE 337
Q67UP5       250 HDRTADLFADLIADDMRKLE-DGKVN--NLSLASKWCPSLYKCYDRSTLLCESIGRRLFPKG-SDAel-----peDLPDE 320 Japanese rice
XP_003560369 262 HDCTADRFAEFLAADMKKLA-SGEIK--DLSLAAKWCPSLESCYDHSTLLCEAIARRLFPKG-SAPdl-----peDLPEA 332
XP_002437375 278 HDCTADLFAKLLAEDLQKLA-DGKLS--DISLAAKWCPSLDSCYDRSTLLCEAIARRLFPKG-SAPdl-----pdDLEDA 348
RCV28018     218 YDRVADTFAELLKSDVEHLR-AGDTS--KIGLAAKWCPSLRSSYDRATLLCEAIARRVFPRE-SNKey------lDLSDK 287
XP_006646747 196 HGRVADTFADLLKSDVEHLR-AGENA--KISLAAKWCPSLRSSYDRATLLCEAIARRMFPYE-SSQey------lHISDK 265
KQK11816     232 YDRVAQMFADMLKSDLEHLR-AGDKG--KIGLAAKWCPSLRSSYDRSTLLCEAIARRVFPRD-SSPey------lGAPDA 301
XP_014758332 296 LDSVADFFADLLASDLEQMAPGGKQR--KIGLAAKWCPTPGSSFDRTTLLCEAIGRRLFPRD-SDPey------aGLSEE 366
XP_004974573 299 FDCVAQFFADLLASDLEQLAPGGKKR--KIGLSAKWCPTPGSSFDRTTLLCEAIARRLFPRD-SSPdy------sDLSEE 369
XP_013952296 485 VYLRHAREQYRKDV-SALRKHLEVVERNISASTFEKIKYERVPSVAMKNYTRLFISKDFDRFQDYITKVAGGKASISGAV 563
XP_003571020 338 HYAYRARERLRKSAiVPLRRALELPEVFISARAWGSVAYTRVASVAMKNYKALFLEHDADRFNAYLADVKSGKKRIAAGA 417
Q67UP5       321 YYAYRVRERLRKMAlVPLRRALHLPEVYISARRWGDVVYSRVASVAMKNYTDLFLEHDHERFNLFLANVKTGKAKIAAGA 400 Japanese rice
XP_003560369 333 HYAYRVWDRLRKEAlVPLRHALELPEVFMSAGAWGELVYRRVASVAMKNYKDIFLERDAERFNLYLADVESGKEKIAAGA 412
XP_002437375 349 YYAYRVRERLHK-AlVPLRRALKLPEIFISAKAWGDVVYKRVASVAMKNYKDLFVKRDKERFESYLADVKSGKAKIAAGA 427
RCV28018     288 HYTYRVRNLLRREVlVPLRKVLELPEVYMSAGQWDELPYARVASVAMNKYKEVFQKRDKPRVVGFFDDVRTGHARVAAGA 367
XP_006646747 266 HYAYRVRNRLRREVlVPLRKVLELPEVYISAGKWEQMPYERVASVAMRQYKKAFEKHNKSGLAGFLDEVRTGHARVPVDA 345
KQK11816     302 HYAYRVRKRLRGEVlVPLRKVLELPEVYMSARKWDEVPYARVASKAMRQYKDAFEKRDKSGVAGFFDEVRAGLAKMPADA 381
XP_014758332 367 HYTYRVLHRLRREVlVPLREVLKLPEVYMSSQRWDELPYARVASVAMKRYKTLFKKHDEERFAKYLEDVEAGKAKIAAGA 446
XP_004974573 370 HYAYRVLHRLRREVlVPLRKVLELPEVYMSAQRWSELPYTRVASVAMRRYKALFKKHDETRFDKYLEDVEAGKAKIAAGA 449
XP_013952296 564 LLPSTLVQSvstaiapasdlkhlsqqeliNRTVKEIEAKVADGQWKTLVQRIKDSGTL 621
XP_003571020 418 LLPHQIVSS--------------------LDGDGDG--GVAELQWQRMADDMRALGKL 453
Q67UP5       401 LLPHDILAS--------------------VDSHDKEGNEVANLQWKRMVDDLLELGKL 438 Japanese rice
XP_003560369 413 LLPHEILER--------------------AGDDD----NVANLQWQRMVDDLLALGKL 446
XP_002437375 428 LLPHEILAS--------------------IDSD-----GVADLQWERMVTDLRALGRL 460
RCV28018     368 VLPHELIAA--------------------ALKGEHD--EAADLQWRSMVSALAAEGRL 403
XP_006646747 346 ALPHELLAA--------------------ALEGKHD--EAAELQWRRMVSTLAAEGRL 381
KQK11816     382 VLPHEIVAA--------------------ALKGEHD--ESAELQWRRMVASLASEGRL 417
XP_014758332 447 LLPHEIAAA--------------------AYRGQED--EVSELQWRRMVDDLRAKGSL 482
XP_004974573 450 LLPHEIAHA--------------------AFNDKAD--DVSELQWRRMVEDLRKKGSL 485
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