Conserved Protein Domain Family
Colicin_D

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pfam11429: Colicin_D 
Colicin D
Colicin D is a tRNase which kills sensitive E.coli cells via a specific tRNA cleavage. It targets the four isoaccepting tRNAs for Arg and cleaves the phosphodiester bond between positions 38 and 39 at the 3' junction of the anticodon stem and the loop.
Statistics
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PSSM-Id: 402853
View PSSM: pfam11429
Aligned: 5 rows
Threshold Bit Score: 117.279
Threshold Setting Gi: 644553430
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
UANL:O3I_024760  288 QLQKKY-KHAGDFGV-NKPWGKAGEAEYKDALQKHIDNPDTKHiQGTYR-GDPAILNYN---PNTGLVVVQSPTGGFV-- 359  Nocardia b...
CAP40933        2945 QLDKKF-KHASDFGIsTTKKNSETLALFESKIKTHISSASTVQ-QGTYGfVKDSKVFFN---SETNNAVVIDGAGNFV-- 3017 Bordetella...
XP_008075874      14 NLQHMFdRHKAAWGYaGRNWNKATGAEFEATIKNFILNTPTVH-AGTYR-DNDAWLVIEqalPNHCAIVYRP---TYEiw 88   Glarea loz...
WP_015926135     455 KLQHEF-KHAGDFGV-TGNWNKVTGEIYQKAIQKHIDTAKDVY-KSTYR-GQDVYVYIN---KTTGVGAYTDLLGNYV-- 525  Ruminiclos...
WP_025331478      24 QLDKKF-KHAADFGItTTKKNPETLGQYETAIKNHMGDSATKP-QGTYGfVKDSKVFFN---SSTNNAVVLDSSGNFV-- 96   Snodgrasse...
UANL:O3I_024760  360 TGWKVN--SEQ 368  Nocardia brasiliensis ATCC 700358
CAP40933        3018 TGFKLSpgTKQ 3028 Bordetella petrii
XP_008075874      89 SGWELS--AAQ 97   Glarea lozoyensis ATCC 20868
WP_015926135     526 GGWKFS--SDQ 534  Ruminiclostridium cellulolyticum
WP_025331478      97 TGFKLTpgTAQ 107  Snodgrassella alvi
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