Conserved Protein Domain Family
Colicin_D

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pfam11429: Colicin_D 
Colicin D
Colicin D is a tRNase which kills sensitive E.coli cells via a specific tRNA cleavage. It targets the four isoaccepting tRNAs for Arg and cleaves the phosphodiester bond between positions 38 and 39 at the 3' junction of the anticodon stem and the loop.
Statistics
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PSSM-Id: 491862
Aligned: 3 rows
Threshold Bit Score: 116.226
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_014985758 288 QLQKKY-KHAGDFGV-NKPWGKAGEAEYKDALQKHIDNPDTKHiQGTYRGDPAILNYN---PNTGLVVVQSptgGFV--T 360 Nocardia brasil...
1_pfamImport   1 NLQHMFdRHKAAWGYaGRNWNKATGAEFEATIKNFILNTPTVH-AGTYRDNDAWLVIEqalPNHCAIVYRP---TYEiwS 76 
WP_015926135 455 KLQHEF-KHAGDFGV-TGNWNKVTGEIYQKAIQKHIDTAKDVY-KSTYRGQDVYVYIN---KTTGVGAYTDllgNYV--G 526 Ruminiclostridi...
WP_014985758 361 GWKVNSEQAENI 372 Nocardia brasiliensis
1_pfamImport  77 GWELSAAQFLYA 88 
WP_015926135 527 GWKFSSDQINFH 538 Ruminiclostridium cellulolyticum
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