1TC3


Conserved Protein Domain Family
HTH_Tnp_Tc3_1

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pfam11427: HTH_Tnp_Tc3_1 
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Tc3 transposase
Tc3 is transposase with a specific DNA-binding domain which contains three alpha-helices, two of which form a helix-turn-helix motif which makes four base-specific contacts with the major groove. The N-terminus makes contacts with the minor groove. There is a base specific recognition between Tc3 and the transposon DNA. The DNA binding domain forms a dimer in which each monomer binds a separate transposon end. This implicates that the dimer has a role in synapsis and is necessary for the simultaneous cleavage of both transposon termini.
Statistics
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PSSM-Id: 192757
Aligned: 3 rows
Threshold Bit Score: 82.0012
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1TC3_C                2 RGSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTS 51  Caenorhabditis elegans
P34257                3 RGSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIREYLKDPVSYGTS 52  Caenorhabditis elegans
WGS:AAQB:GK16067-PA   3 RGTSLSDYEQGIILGMHESGSKISEIATRLNRHRNCISRFLKNPSKYGAT 52 
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