Conserved Protein Domain Family
Synthase_beta

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pfam11421: Synthase_beta 
ATP synthase F1 beta subunit
The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site.
Statistics
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PSSM-Id: 402848
View PSSM: pfam11421
Aligned: 10 rows
Threshold Bit Score: 39.3724
Threshold Setting Gi: 566190494
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EEF30158       1 MASRRLLSSLLRSSTRRSVSKsp-lsNSNPKLSTPSpiSTRRASSYGYLLNR 51   castor bean
XP_002283951   1 MASRRLLSSLLRSSVRRYSAKs---pAISPRTPSPY--PSSRPSPKGFLLNR 47   wine grape
KRG90945       1 MASRRFVSSLIRSSLRRSQSKps-isASASRLT-----SSNRASPHGYLLNR 46   soybean
XP_002315902   1 MASRRLLSSLLRSSSRRSISKst-lsSTNPKVSAS---STRRASPYGYLLNR 48   black cottonwood
EFH47614       1 MASRRILSSLLRSSSGRSTSKssligSRNPRLSSPG--PAHRAAPCGTLLGR 50   Arabidopsis lyrata subsp. lyrata
EFH49635       1 MASRRVLSSLLRSSSGRSAAKl---gNRNPRLPSPS--PARHAAPCSYLLGR 47   Arabidopsis lyrata subsp. lyrata
XP_009122490   1 MASRRVLSTLLRSSSSRSAARf---aTRNPRLPPPS--PARCASPFGDLLGR 47   field mustard
XP_009393584   1 MATRRALASLLRSSAQRSHAi----rLPAPRRLPPS--IASRTSPTGFLLSR 46   wild Malaysian banana
XP_009418422   1 MASRRLLSSLLRSSARRSPAp----rSSAAACPTPR--AAPRPSPAGYLLSR 46   wild Malaysian banana
THU72542       1 masrcllssllrsstrrGPAl----gSAAATCPISR--AAPRPSPIGFLLSR 46   Balbis banana
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