Conserved Protein Domain Family
Med25_NR-box

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pfam11244: Med25_NR-box (this model, PSSM-Id:463246 is obsolete)
Mediator complex subunit 25 C-terminal NR box-containing
The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA, domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and this C-terminal NR box-containing domain (646-650) from C69-747. The NR box of MED25 is critical for its recruitment to the promoter, probably through an interaction with pre bound RAR.
Statistics
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PSSM-Id: 463246
Aligned: 3 rows
Threshold Bit Score: 83.549
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ELK18520 600 AGVPPPQAPLHHLQPpGAPPMLPPP-------HQGLGQPQL---GPPLLHPPPTQSWSAQLPPRAPLPGQMLLSGAPRGA 669
A4IHD9   703 TSVPQTQQPLHHMQQ-AAQGMLPHQamgqqmqHQAPGQQQLqlpGQTLMHQAPAQQWGNQMQQRAPIPGTLMMSAGPRGP 781 tropical clawed frog
ACB88876  32 slllnppppqtgvpppqaslhhlqppgapallppphqglgqpqlgppllhpppAQSWPAQLPPRAPLPGQMLLSGGPRGP 111 human
ELK18520 670 VPQPGL----PPSVMEDDILMDLI 689
A4IHD9   782 VPQQGLqqvqAQSVMEDDILMDLI 805 tropical clawed frog
ACB88876 112 VPQPGL----QPSVMEDDILMDLI 131 human
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