Conserved Protein Domain Family
YjjI-like

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pfam11230: YjjI-like 
Glycyl radical enzyme YjjI-like
Members in this family are homologues to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Statistics
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PSSM-Id: 491717
Aligned: 25 rows
Threshold Bit Score: 763.306
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6LQL7        17 LTVKQKSTYLSLEAEASLDYVPVTEGVNTAMKAGIICDMFEGHAPFKPRYVLPDYAKFLQNGSVYLELPPVADFDDALNA 96  Photobacterium ...
WP_011755330  19 LTFRQRMHRLATLAENSLEPPEVSAACAEALDKRIICDMYEGNAPHRPRYLLPDFALLLRNGSAFLELGPATDLDEALAT 98  unclassified No...
WP_013345544  20 LTPAQKQLALYQRLEAALPGCAYDDEVAEAVSSGLLHEMFEPAAPFKPRYTLPDYAVTLNQGSAFLELEPAEDFDDALHL 99  Ferrimonas bale...
P37342        22 LSPEQKRHFLALEAENNLPYPQLPAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLANGSEWLELEGAKDLDDALSL 101 Escherichia col...
WP_011704587  16 LSPAQKSHALALAAENALPYPELPAEVSEAMAKGFVCDMFEGHAPYKPRYVLPDYEKFLRQGSAWLELAPPQDFDEALDA 95  Aeromonas hydro...
Q8EEH5        16 LSPKQKSNYLALEAEASLPYMPISTEVNAAMNDGVICDMFEGHTPFKPRYVLPDYARYLQQGSEYLELSPAQDLDEALNA 95  Shewanella onei...
Q87PX0        39 LSPKQKSNFLALEAEACIPYMPISEALREAMSDGVICDMFEGHAPFKPRYVLPDYAKFLSQGSEYLELSPAEDFDDALNM 118 Vibrio parahaem...
Q5DYW5        15 LSPKQKSNYLALEAEASLPYMEINTETRKAMDDGVLCDMFEGHAPFKPRYVLPDYAKFLTQGSEYLELSPAENFDDALNL 94  Aliivibrio fisc...
WP_015463930  15 LSVKQKTQYLALEAEASLPYLEINQSVQDALDAGILCDMFEGHAPFKARYVLPDYAKFLAQGSTYLELEAATNFDEALNL 94  Psychromonas sp...
WP_012808232  13 LSYKQKVLHLAQAAENSEHPIKTTAEFDRLFKAHAIDDMCEGNAPYRPRYICPDYQVFAQNGSEFLRFDKPENLDDLLWG 92  Lancefieldella ...
Q6LQL7        97 LTIIYHHVPSVTNIPVYLGALDDILIDYVQDlTHDEIYRKLKRFWIMLDRTLPDAFMHVNIGPTDNIICRTILKIDAELK 176 Photobacterium ...
WP_011755330  99 LLIGYSQVPSITGYPVWLGDLDALLEPYVEGvSEEELHRKLRLFWISLDRMFPDAFTHANLGPDDSRVGRMALRLERELL 178 unclassified No...
WP_013345544 100 LTILYQHVPSVTTYPVFLGHLDTLLEPYAAElSDEQLYRKLRRFWQMIDRIVPDSFAHVNLGPQDSRVGRSLLRIDAELA 179 Ferrimonas bale...
P37342       102 LTILYHHVPSVTSMPVYLGQLDALLQPYVRIlTQDEIDVRIKRFWRYLDRTLPDAFMHANIGPSDSPITRAILRADAELK 181 Escherichia col...
WP_011704587  96 LRILYHHVPSVTGMPVWLGRLDHLLLPFVGElDDEALYRKLKGFWIYLDRVLPDAFMHVNIGPDDNRLCRLILRIDGDLK 175 Aeromonas hydro...
Q8EEH5        96 LTILYHHVPSVTNIPVYLGQLDDILMPFVEGmDADALYRKLKLFWIMLDRTLPDAFMHVNLGPTDNIVCRTLLRIDAELK 175 Shewanella onei...
Q87PX0       119 LTIIYHHVPSVTNIPVYLGQLDDVLMPYVGDqTEAQIYKKLRHFWIMLDRTLPDAFMHVNIGPTDNIICRTILRVDAELK 198 Vibrio parahaem...
Q5DYW5        95 LTIIYHHVPSVTSIPVYLGQLDTVLLPYVGAlSDEEIYQKIKRFWIMLDRTLPDAFMHVNIGPTDNIICRTILRVDAELK 174 Aliivibrio fisc...
WP_015463930  95 LTILYHHVPSVTTIPVYLGQLDSVLLPYVGSlTDDQIYQKLKLFWIMLDRTLPDAFMHVNIGPTDNIICRTILRIDAQLK 174 Psychromonas sp...
WP_012808232  93 LATLYDNVPSVTSRPVYVGQLDKIIDPFLEGmTDDEIKPRLRRFLNHIDRTVASGYCHANIGPEDTRAGRLLLEVERELM 172 Lancefieldella ...
Q6LQL7       177 QIAPNLTFMYDPEITPDDLLRVATTNICECSKPHIANYPIHAKTYDeKGFGIVSCYNSLPLAGGANTLVRMNLKQAAQQA 256 Photobacterium ...
WP_011755330 179 QVVPNLSLKVDPERTPDDYVRDAVETVFACGKPHFVNHPMMVGDLG-AAYGVVSCYNSLVAGGGSHTLTRLNLREVALRH 257 unclassified No...
WP_013345544 180 QAVPNLTFRYQQGITPDDLLEQLTDNIIRCNKPHIANHERIARDFe-GDYANVSCFNSLPLGGGAHTLLRLNLRVSFGLC 258 Ferrimonas bale...
P37342       182 QVSPNLTFIYDPEITPDDLLLEVAKNICECSKPHIANGPVHDKIFTkGGYGIVSCYNSLPLAGGGSTLVRLNLKAIAERS 261 Escherichia col...
WP_011704587 176 QVAPNLTLFHDPAQTPDSLLLQGVKNIAACSKPHIANYPLHRNTFDeRGFGIVSCYNALPQAGGANTLVRVSLKRVAEQA 255 Aeromonas hydro...
Q8EEH5       176 QVAPNLTFMYDPAVTPDELLQIATTNICQCSKPHIANYPQHASAFDaCGFGIVSCYNALPLAGGANTLVRLNLKEVALKA 255 Shewanella onei...
Q87PX0       199 QIAPNLTFMYDESITPDDLLRQATKNICDCSKPHIANYPIHANAYDgERFGIVSCYNSLPLAGGSNTLVRMNLKEVAKRA 278 Vibrio parahaem...
Q5DYW5       175 QIAPNLTFMYDADITPDDLLRQAASNICECSKPHIANYPVHAQAYNnTGFGIVSCYNSLPLAGGSNTLVRMNLKEAAKKA 254 Aliivibrio fisc...
WP_015463930 175 QVAPNLTFMYDAKVTPDDLLRQVTQNICECSKPHIANYPLHASAFDeSGFGIVSCYNALPLGGGANTLVRMNLKEVAKKS 254 Psychromonas sp...
WP_012808232 173 NAVPNFTLKYDPEITSDEFMRLAVKTTMVCSNPAFANHRIHKETYP-GEYTVVSCYNVLPMGGGAYTLSRVLLPGLAKLA 251 Lancefieldella ...
Q6LQL7       257 KN-STFFLAeTLPHYCQVMYELIEARTQFLHEESHFF-DSFLVKEGLIEENRFAPMFGIYGMAEAVNILIEKDGQEKDta 334 Photobacterium ...
WP_011755330 258 EGeRTSFLDeLLPRYVELTAELMEARIRHLVEEARFFeHSWLVTDGLLHLDRYAAMFGVYGLAEAVSIVLEHEGVEAR-- 335 unclassified No...
WP_013345544 259 DGtVEDYLAnALPRCVDLMTRGLAHRINALVEDTQFYrHHFLCQEGLLDPAKFTAMFGIYGTAELVNQLMAAQGKTGR-- 336 Ferrimonas bale...
P37342       262 ES-LDDFFTrTLPHYCQQQIAIIDARCEFLYQQSHFFeNSFLVKEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAAR-- 338 Escherichia col...
WP_011704587 256 HG-IDDFLGcLLPHYCRLASRLIEARAAFLHQESGFF-DSFLVQEGLLEEDRFVPMFGIYGMAEAVNLLMDKENLPER-- 331 Aeromonas hydro...
Q8EEH5       256 TS-INDFFErVLPYYCSLTFELIEARSAFLHQESHFF-DSFLVKEQLIDESRFAPMFGIYGMAEAVNILQAQMTSETDks 333 Shewanella onei...
Q87PX0       279 AS-RDDFFSnVLPTYHQLMTELMDARSSHLHEQSQFF-QGFLTQEGLIEESRFAPMYGIYGMAEAVNLLLEKEGQTSR-- 354 Vibrio parahaem...
Q5DYW5       255 EN-KSDFVNhVLPHYCNIMFGLIETRSAFLHEKSNFF-EGFLTKEGLINEDRFAPMFGIYGMAEAVDILMEKEGIEAK-- 330 Aliivibrio fisc...
WP_015463930 255 KN-KENFFNiQLPKYCALMFDLIDVRSTFLHEKSHFF-SEFLVQEGLIHEDRFAPMFGIYAMAEAVEILLQKDNIKSC-- 330 Psychromonas sp...
WP_012808232 252 TN-VDDFMNnLLPTATSEVLNFMNERVRFIVEDSNFFeTSFLAKEGLISRDRFCGMFGVAGMSECVAELLHLDS-SRT-- 327 Lancefieldella ...
Q6LQL7       335 dkesrhatkenlYGHDQTANQLGHQISATLDRIVKSTPVKYG--YNNRALLHAQGGISLDKDVTPGVRIPYGTEP-DPVT 411 Photobacterium ...
WP_011755330 336 ------------YGHDDVADELALQILTRVHELVAARPMPYCegNGGRAFLHSQSGIDSDLGVTAGCRIPVGDEP-DLLR 402 unclassified No...
WP_013345544 337 ------------YGLDEEANVLAERIIAAYAEAVEAIRLPHC--LDNKVMLHAQSGISCDTEETAGTRIPIGEEP-DPAS 401 Ferrimonas bale...
P37342       339 ------------YGKEAAANEVGYRISAQLAEFVANTPVKYG--WQKRAMLHAQSGISSDIGTTPGARLPYGDEP-DPIT 403 Escherichia col...
WP_011704587 332 ------------YGRDEEANQLGYRISAQLARHVSEAPQVHA--WGGRALLHSQGGLSVDRGVTPGVRIPYGEEP-DPAS 396 Aeromonas hydro...
Q8EEH5       334 sqs----nkptgYGHSMDANQLGYRISAALDTIVKSTPVTYG--YHGRALLHSQGGISLDKGVTPGVRIPYGTEP-NPIA 406 Shewanella onei...
Q87PX0       355 ------------YGQDERANALGHEISASLATLVDSTPVRYG--LEGKALLHAQGGISLDLDVTPGVRLPYGNEP-DPVT 419 Vibrio parahaem...
Q5DYW5       331 ------------YGHDEIANQLGHAISKQLSEIVDATDVKYG--YHGKALLHAQGGISLDIDVTPGVRIPYGTEP-DPVS 395 Aliivibrio fisc...
WP_015463930 331 ------------YGLDSVANTLSYEISKTLSEIVTSTKVKYG--YHGRALLHAQGGISLDHECTPGVRIAYGKEP-DPIA 395 Psychromonas sp...
WP_012808232 328 ------------YGKDDEANELADQIMVKIADQVNSFDAVYSevFGGRFTLHAQAGFSDQKGVTPGVRIKVGDEPaNLYD 395 Lancefieldella ...
Q6LQL7       412 HIQALASHHQYYTSGISEILTIDETVKDNPEAMYQLCKGALNLGFREFTANVASNDLVRVTGYMIKLSDVAVFKE-KGSR 490 Photobacterium ...
WP_011755330 403 HLRTITPNHALFPAGISDVLAFDDTARRNPDAVVDVIRGAFRTGMRDVTFNLDSNDFIRITGYLVRKSDLAKIEH--GAR 480 unclassified No...
WP_013345544 402 YIRATARMHTYFQAGVSDILGFDPTIRRNPDALTRLIKGGFRLGMRVFTANLSDSDLVRVTGFLVKKSDIEKYRQ-QAER 480 Ferrimonas bale...
P37342       404 HLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRA-EGSR 482 Escherichia col...
WP_011704587 397 HMLALAPHHGFYHSGISEILTLDPTIRQNPQALLQLCKGALAIGMREFTANVADSDLVRVTGYMIRKSDVARFAT-EGSR 475 Aeromonas hydro...
Q8EEH5       407 HIQALAQHHQYYTAGISDILTIDETVKSNPQAMFQLCKAALELGFREFTANVASNDLMRVTGYMVKRSDIEAFKQ-CGSR 485 Shewanella onei...
Q87PX0       420 YVQATAAHHQYYRAGISDILTIDETVKSNPEAMFNLCKGALNAGYREFTANVASNDLVRVTGYMVKLSDIAKYDA-EGSR 498 Vibrio parahaem...
Q5DYW5       396 YVQATVGHHQYYTSGISDILTIDETVKSNPEAMFNLAKGALQLGYREFTANVASNDLVRITGYMVKLSDIAKYDA-EGSR 474 Aliivibrio fisc...
WP_015463930 396 YIQATAPHHQYYPSGISDILSIDETVKSNPEAMFALAKGALKMGYREFTANISSNDLVRVTGYMVKRSSMAKFAE-QGSR 474 Psychromonas sp...
WP_012808232 396 HIRHSARMHRFFNSGVSDIFPAEPTAERNPDAVIDVVKAAFSIDDKYLSFYSSEGDLVRITGFLAKRSEMKKFQSgNVVL 475 Lancefieldella ...
Q6LQL7       491 TNTTWLGAEASENTGILNRKPR 512 Photobacterium profundum
WP_011755330 481 HDSTFLAAGSVAQSHV-DRRVP 501 unclassified Nocardioides
WP_013345544 481 HTSTALGLEAVDVGQILSRQAR 502 Ferrimonas balearica
P37342       483 TNTTWLGEEAARNTRILERQPR 504 Escherichia coli K-12
WP_011704587 476 LQTTCLGAEASELTGIRQRAPR 497 Aeromonas hydrophila
Q8EEH5       486 LNTTGLGAEAAQNTGILQRQAR 507 Shewanella oneidensis
Q87PX0       499 TNTTFLGAEAAKNTGILERSPR 520 Vibrio parahaemolyticus
Q5DYW5       475 TNTTFLGAEAAKNTEVLNRTPR 496 Aliivibrio fischeri ES114
WP_015463930 475 TNTTFLGSEALQNTNISKRRAR 496 Psychromonas sp. CNPT3
WP_012808232 476 QDTAHDGLGNFTANHLADRKVR 497 Lancefieldella parvula
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