Conserved Protein Domain Family
YgaP-like_TM

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pfam11127: YgaP-like_TM 
Inner membrane protein YgaP-like, transmembrane domain
This domain is found in proteins from bacteria and archaea, including Inner membrane protein YgaP from Escherichia coli, a membrane protein with a rhodanese domain (Pfam: PF00581) that may have sulfurtransferase activity. YgaP adopts a dimeric assembly. This entry represents the transmembrane domain. It consist of two slightly tilted alpha-helices. Structure prediction suggests that this region may homodimerize to form a 4 helical bundle.
Statistics
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PSSM-Id: 491628
Aligned: 71 rows
Threshold Bit Score: 31.8693
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Noca_3779   1 MSprwpvnvtPPERVARIVIGAAAAVGGVALltagpgiivlvlEVLLVLAGLDLVVTGAVGHCPLYARL-H---HVPSSL 76 
WP_009943205  109 M-----------ERQVRLVAGSIVLAGVLGSlry------pklKLLAGFIGGGLTFSALTNTCGMARLLsLl-pYNR--- 167 Saccharopolyspora
WP_013307585    1 M----------LNKYFRIAVGSFVLISGLGAmfhs-----ehwLWFTLFIGVNMIQSAFTKWCLLEKILvKl-gAKPGGE 64  Maribacter sp....
Q0A506          1 M---------TVNAGLRMLAGFFVLLTVVLAyahh-----eawLLFTAFVGLNLLQSAFSGWCPAMAVLrKl-gFKQERP 65  Alkalilimnicol...
WP_012532277    1 M---------YIDRLLRLIAGSFTLISLALAhyhd-----prwLWFTAFIGLNLLQSGFTDWCPMMTILkKl-gVSKLPP 65  Citrifermentan...
Q5QWI2          1 M---------SVERAITAFAGFMVLLSVALTywvh-----pnwVWLTVFIGANLFQQSFTGFCPAGIFMrKvlgLKTERE 66  Idiomarina loi...
Q12PC9          9 L---------SLERAIMAFAGFMMLLSLGLTvwls-----shfIWLSVFVGANLFQSAFTGLCPAAKVMsKl-gIKTQAQ 73  Shewanella den...
Q2IFX1          1 M---------TAERGVRILAGTFVLVSLLLGaqasplfvnaswLWLTVFVGANLFQSGFTGFCPAEIIMrKa-gLRGAPV 70  Anaeromyxobact...
WP_012098369    1 M---------TVDNGVRVVAGTVVLTSLALGvaasplfvssrfLWLTAFVGVNLLQSAFTGFCPAEMILrKa-gLPD--- 67  Anaeromyxobact...
WP_011906611    3 YSkn----vpGWERVLRLMMGMGALAFAWINwhv------spmAVMAGVMGAMLAMTGLIGFCPACAMA-G---RKLEKA 68  Novosphingobiu...
jgi:Noca_3779  77 E 77 
WP_009943205  168 T 168 Saccharopolyspora
WP_013307585   65 S 65  Maribacter sp. HTCC2170
Q0A506         66 V 66  Alkalilimnicola ehrlichii MLHE-1
WP_012532277   66 Q 66  Citrifermentans bemidjiense
Q5QWI2         67 L 67  Idiomarina loihiensis
Q12PC9         74 L 74  Shewanella denitrificans OS217
Q2IFX1         71 P 71  Anaeromyxobacter dehalogenans 2CP-C
WP_012098369   68 G 68  Anaeromyxobacter sp. Fw109-5
WP_011906611   69 R 69  Novosphingobium aromaticivorans
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