Conserved Protein Domain Family
Minor_capsid_2

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pfam11114: Minor_capsid_2 
Minor capsid protein
Most of the members of this family are annotated as being minor capsid proteins. The genomes carrying the genes usually have three similar proteins adjacent to each other, hence this one being named as No.2.
Statistics
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PSSM-Id: 402611
View PSSM: pfam11114
Aligned: 10 rows
Threshold Bit Score: 116.782
Threshold Setting Gi: 524163218
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CCZ35667               3 AKVKVEIHKPRAMAKIRAAgNQGLTDVRDEIIDDIN-RYVPKSGGSpqnggggdLRRSAELHSDqqakdgnlKVRWDTPY 81  Firmicu...
Q9A0N5                 2 AKVVVELGGIKRKVSPQAL-AKGKLIMNNQVMMSMN-PYVPYRDGA--------LRGSSRANSV--------GVTWSGPH 63  Strepto...
SKLIDPC::KE3_1400      4 IRTKADLSGAERKVSDANV-LRGKRALANQVLMDTD-KYIPMKGGA--------LRASGQIAIDg------sAVSWNTVY 67  Strepto...
microsynth:EHR_02600   1 mGVKVDIGGIRKKISPEAM-KRGRYALGNQAMADMN-RYVPKRSGGg------aLRGSAHLNGDh------sKIIYQTPY 66  Enteroc...
WP_013774275           3 VKIHVDTKEVQQIAMMKNM-NRSEFALINQVHADMN-LYVPKKEGH--------LRDDSYAQDM--------SIYYPLSY 64  Melisso...
WP_015077109           1 mSVTVNFGGIKRKISSQNV-KRGQYAVANQAMADMD-RFVPRKEGN--------LRTAVHVTSVg-------KILYEMPY 63  Carnoba...
Q8Y4Y6                 3 IKVRVDLSKAKGSVKKAK--ERGQFALINQAAADIA-PYVPFLEGD--------LSNQYVIMNDk-------EIMWTSIY 64  Listeri...
CCX40789               5 yavnistaKILRRYGLGED-KAAQRFLAEDVERKCQ-PYVPMSAGSaa-----hMVNAARVTAD--------SIIYPGPY 69  Firmicu...
WP_023520362           4 IKIDIDLSGVRSKLSEDNL-GLGQLNMANRMLQTMNeTVVPWDTMH--------LRDTGHVSGRg------sQLIFDAPY 68  Enteroc...
BAO07817               3 ASVRIDLSRAKIKLSHSSI-QNGRHEMANTAHLDMNeRFVPMRSQH--------LRDKSFVESNg------eKITWNARY 67  Enteroc...
CCZ35667              82 AQYQHEGKvmhgtpktrtygPEQ-------LKYTEPMARKEW-EQY--AE-RKHGADWSLAIEEAM 136 Firmicutes bacterium ...
Q9A0N5                64 ARAQFYGG------------AYNkyksfkfKKYTTPGTGKRW-DKRalAN-ATIVKDWEKSLLRGM 115 Streptococcus pyogene...
SKLIDPC::KE3_1400     68 ARAQFYG---------------Tngi-vvfKKYTTPGTGKLWyDKSaeAN----VDKWKRVAAKGM 113 Streptococcus lutetie...
microsynth:EHR_02600  67 AKAQYYG---------------Tngk-vvfRKYSTPGTGKRW-DLK--AN-SIHGANWKKAFLRGA 112 Enterococcus hirae AT...
WP_013774275          65 AKAQFYGGf-----------TTKngkevhfTNYTTPGTGKRW-DLK--AK-ANHIRAWKQAFLKGg 115 Melissococcus plutonius
WP_015077109          64 AKRQFHln---------------------gTTYSTPGTGPRW-DLK--AK-GMYMDSWKKAFLRGS 104 Carnobacterium
Q8Y4Y6                65 ARRLYNGinf------------------nfTLTHHPLAGPKW-DQR--AK-VDKLESWIEVAQKAv 108 Listeria monocytogenes
CCX40789              70 AHYQYVGEgma-------grAPKhytgqplTYQGAPMRGKQW-DKRmmADhGKEVEKDLEGYLKGR 127 Firmicutes bacterium ...
WP_023520362          69 AGPQYYGGrkhpvtgvwipfVNK-----------QPGTGPFW-DEA--AK-PLFMSDWLQAFKIGa 119 Enterococcus mundtii
BAO07817              68 ALAHYHGGf-----------TNKfgtqvifSDYTTPGTGPYW-DKE--AK-SIFMSSWLEAFKRGA 118 Enterococcus mundtii ...
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