2IN5


Conserved Protein Domain Family
YjbF

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pfam11102: YjbF (This model is not part of the current CDD release)
Group 4 capsule polysaccharide lipoprotein gfcB, YjbF
This family includes lipoprotein GfcB (YmcC), involved in group 4 capsule polysaccharide formation. YjbF is a family of Gram-negative bacterial outer-membrane lipoproteins, predicted to be a beta-barrel and possibly a porin that is one of four gene-products expressed from an operon, yjbEFGH, which is regulated by the Rcs phosphorelay in a RcsA-dependent manner, similar to that of other exopolysaccharide biosynthetic pathways. It is highly possible that the yjbEFGH operon encodes a system involved in EPS secretion since none of the products is predicted to have enzymic activity, the products are all secreted and YbjF and H are predicted to be beta-barrel lipoproteins similar to porins. It may be that the operon products play some role in biofilm formation and/or matrix production.
Statistics
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PSSM-Id: 519602
Aligned: 19 rows
Threshold Bit Score: 154.451
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2IN5_A         10 DTFRASLFD-----------------------NQDITVADQQIQALPYSTXYLRLNEGQRIFVVLGYIEQE------QSK 60  Escherichia co...
Q5QWW3         26 ATIEYAFEG-----------------------GEDAELSQEKIDSFPYTSLYAQWSDNPRSLIVLGYVNKPd-----DWH 77  Idiomarina loi...
Q87T53         35 ATVQEAYGN-----------------------YIDVELTPEEIEAVPYASAYLKIGDQKQVFVVLAFAEQNpltgntQLK 91  Vibrio parahae...
DSC:DSC_07640  23 DALRTIVAS-----------------------HRELAPTPAQVAALPYAQILLNWPDGS-ALMVLGNDDAG------QTS 72 
WP_014744204   34 DTLQAVFFR-----------------------NSAPTAEEIDVDKLPVSAILVEFGRGS-ARVALADTRDG------TLV 83  Tistrella mobilis
WP_012187250   58 DDLVAVVQTrlep---------------dpaaGTETRITRAMLAGVTDPLIRVTRLPDGPVATLVPAARGGpaa-apLIT 121 Dinoroseobacte...
WP_025312414   41 RNLTSAILPggeae-------------tttasEARAMLTRDRIERINRPLLLVEWPTVDGAELFSLVGENGg-----VET 102 Roseicyclus el...
WP_011750365   29 REANPLLIAartagsavsgmrggeaeqapaapRTPEQMAAEALRVNPAPLVMVNFESLGRTQVMAMTGQNGa-----MRT 103 Paracoccus
tigr:AHA_2876  39 ETLGYVFHK-----------------------ENEIVLTSTQLRQLPYASAYIKVGDLPQALVVLAYVNGD------RLS 89 
GAC35967       43 QTLKIVFSE-----------------------QQAAQLSFPEVQQSEIDVISVKRGERPSAIMALAYLENN------QHK 93 
2IN5_A         61 WLSQDNAXLVT-HNGRLLKTVKLNN-NLLEVT---------NSGQDPLRNALAIk----DGSRWTRDILW-------SED 118 Escherichia co...
Q5QWW3         78 FITAEKETLVL-RNGRVIRTQALNK-NLLAVS---------NLKDDPLRCIVTSqa--nCPTHWRRQYDI-------EMA 137 Idiomarina loi...
Q87T53         92 WVSADKAMVVT-ENGHIVKTIGLQTtNLAGIY-------------------GNIpaystPSTQYALSYDW-------SDK 144 Vibrio parahae...
DSC:DSC_07640  73 WYSNDRHMVYL-RDGLLVGSTGFAQ-DAMQIR---------IEGDNPFDELTRAa----QATTVIRRYDW-------MPG 130
WP_014744204   84 WRARDRAEVHT-RQGILVRTVGLPD-NLRVVRfeglpggltTPVPDAA-----------GAGGYIRLFDM-------PSR 143 Tistrella mobilis
WP_012187250  122 WRGRDPVTLTT-RGGLLVATRGLGR-DLMSSD-----------------LRGLAqalraGGGRYARSHVVlvgntdaLT- 181 Dinoroseobacte...
WP_025312414  103 WRSPEDRGLALtSDGVLRSTRGYGA-DLMASE----------------ATALVAtwsgqRAGSYNRIMVHldgelreQSR 165 Roseicyclus el...
WP_011750365  104 YMAPSKEALIL-RDGMLIGTRGLGN-DLSVVE-----------------PQTEAliragRSGSAQRVMRYysgdgleRP- 163 Paracoccus
tigr:AHA_2876  90 WMSADGVMFIT-EHGRLVKTIGLPN-DLRYLG---------YMDQDPLRIARLDk---lSSMVWYSVAEW-------SHK 148
GAC35967       94 WVSSDNVMLVM-EKGRVVRTLGLDN-NLLYTS---------NSEMDPLKLLQFTlkgepKSKTWSRIVDR--------SS 154
2IN5_A        119 NHFRSAtLSSTFSFAGLETLNIAGRNVLCNVWQEEVTSTR------PEKQWQNTFWVDSATGQVRQSRQXLGAGVIPVEX 192 Escherichia co...
Q5QWW3        138 NKVVSReASSEFSVQDKQVLNLPIGPVNTTYVVEKGEFTL------SGQEFVNEFWL-EDDGHVVKSRQTLFPGGDKLTL 210 Idiomarina loi...
Q87T53        145 YRYGFL-AKVERALQGKETVITPISSIATDVYTEVVTFTS------LEKSVENQYWV-NSKGEVVKTRQHLGPNMVPVEL 216 Vibrio parahae...
DSC:DSC_07640 131 YRYG-AvVRGRLVRRGRETVRILGTDRQLDRFEEVLEGPG--------LRALNQYWVDPASGEIWKSRQLVAPGLS-VEI 200
WP_014744204  144 RLYDIR-ADCKLEEAGQEQVTVGKYTFDTSVYDEDCTVES------MRWRFTNRYWYESESKRIWRSRQVISPELGTMEI 216 Tistrella mobilis
WP_012187250  182 -----LsFDCTLRAEGAETITILERSVATTRFTEACAGPT--------GTFGNTYWRGAGDGTLWQSQQWAGPDFGHVRI 248 Dinoroseobacte...
WP_025312414  166 SQ---SlHVCSVRATGRETIDIYDIHYTVTRLVETCETPA--------GSYDNQYWV-EANGTVRRSEQWVSPEVGHLLI 233 Roseicyclus el...
WP_011750365  164 -----LsFDCTVGPGPKPGV-----------IVESCEGHG--------ARFQNNFMP--QGGHLPVSRQWAGPRLGYITI 217 Paracoccus
tigr:AHA_2876 149 YTSGYP-LSMHYRRVGNEVLEVMDKPYTTTIIEESVTASP------SEVQWNNYFWIDEHSGQVRKLKQQLGPSLPVIEM 221
GAC35967      155 DEYGYP-IESTFNQASADTIQALNLNIETVLYIENLSYMApsnylrFNTNWKNYFWF-TNNGVLIKSIQQDSPLSESLEI 232
2IN5_A        193 TFL 195 Escherichia coli K-12
Q5QWW3        211 TQV 213 Idiomarina loihiensis
Q87T53        217 TIL 219 Vibrio parahaemolyticus
DSC:DSC_07640 201 TQL 203
WP_014744204  217 TLL 219 Tistrella mobilis
WP_012187250  249 ERL 251 Dinoroseobacter shibae
WP_025312414  234 ERL 236 Roseicyclus elongatus
WP_011750365  218 QTL 220 Paracoccus
tigr:AHA_2876 222 TFL 224
GAC35967      233 TYL 235
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