2IN5


Conserved Protein Domain Family
YjbF

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pfam11102: YjbF (491616 is an unknown moldel)
Group 4 capsule polysaccharide lipoprotein gfcB, YjbF
This family includes lipoprotein GfcB (YmcC), involved in group 4 capsule polysaccharide formation. YjbF is a family of Gram-negative bacterial outer-membrane lipoproteins, predicted to be a beta-barrel and possibly a porin that is one of four gene-products expressed from an operon, yjbEFGH, which is regulated by the Rcs phosphorelay in a RcsA-dependent manner, similar to that of other exopolysaccharide biosynthetic pathways. It is highly possible that the yjbEFGH operon encodes a system involved in EPS secretion since none of the products is predicted to have enzymic activity, the products are all secreted and YbjF and H are predicted to be beta-barrel lipoproteins similar to porins. It may be that the operon products play some role in biofilm formation and/or matrix production.
Statistics
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PSSM-Id: 491616
Aligned: 18 rows
Threshold Bit Score: 155.993
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2IN5_A          9 VDTFRASLFD-----------------------NQDITVADQQIQALPYSTXYLRLNEGQRIFVVLGYIEQE-----QSK 60  Escherichia co...
P32687         24 GNSLWDSLFG-----------------------TPGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFAEDG-----QQK 75  Escherichia co...
Q5QWW3         25 RATIEYAFEG-----------------------GEDAELSQEKIDSFPYTSLYAQWSDNPRSLIVLGYVNKPd----DWH 77  Idiomarina loi...
DSC:DSC_07640  22 YDALRTIVAS-----------------------HRELAPTPAQVAALPYAQILLNWPDGS-ALMVLGNDDAG-----QTS 72 
WP_014744204   33 FDTLQAVFFR-----------------------NSAPTAEEIDVDKLPVSAILVEFGRGS-ARVALADTRDG-----TLV 83  Tistrella mobilis
WP_012187250   57 WDDLVAVVQTrlep---------------dpaaGTETRITRAMLAGVTDPLIRVTRLPDGPVATLVPAARGGpaaapLIT 121 Dinoroseobacte...
WP_025312414   40 ARNLTSAILPggeae-------------tttasEARAMLTRDRIERINRPLLLVEWPTVDGAELFSLVGENGg----VET 102 Roseibacterium...
WP_011750365   28 GREANPLLIAartagsavsgmrggeaeqapaapRTPEQMAAEALRVNPAPLVMVNFESLGRTQVMAMTGQNGa----MRT 103 Paracoccus
1_pfamImport    1 IETLGYVFHK-----------------------ENEIVLTSTQLRQLPYASAYIKVGDLPQALVVLAYVNGD-----RLS 52 
WP_007634927   42 YQTLKIVFSE-----------------------QQAAQLSFPEVQQSEIDVISVKRGERPSAIMALAYLENN-----QHK 93  Paraglaciecola...
2IN5_A         61 WLSQDNAXLVT-HNGRLLKTVKLNNNLLEVT---------NSGQDPLRNALAIK----DGSRWTRDILW-------SEDN 119 Escherichia co...
P32687         76 WVTQDQATLVT-QHGRLVKTLLGGDNLIEVN---------NLAADPLIKPAQIV----DGASWTRTMGW-------TEYQ 134 Escherichia co...
Q5QWW3         78 FITAEKETLVL-RNGRVIRTQALNKNLLAVS---------NLKDDPLRCIVTSQa--nCPTHWRRQYDI-------EMAN 138 Idiomarina loi...
DSC:DSC_07640  73 WYSNDRHMVYL-RDGLLVGSTGFAQDAMQIR---------IEGDNPFDELTRAA----QATTVIRRYDW-------MPGY 131
WP_014744204   84 WRARDRAEVHT-RQGILVRTVGLPDNLRVVRfeglpggltTPVPDAA-----------GAGGYIRLFDM-------PSRR 144 Tistrella mobilis
WP_012187250  122 WRGRDPVTLTT-RGGLLVATRGLGRDLMSSD-----------------LRGLAQalraGGGRYARSHVVlvgntdaLT-- 181 Dinoroseobacte...
WP_025312414  103 WRSPEDRGLALtSDGVLRSTRGYGADLMASE----------------ATALVATwsgqRAGSYNRIMVHldgelreQSRS 166 Roseibacterium...
WP_011750365  104 YMAPSKEALIL-RDGMLIGTRGLGNDLSVVE-----------------PQTEALiragRSGSAQRVMRYysgdgleRP-- 163 Paracoccus
1_pfamImport   53 WMSADGVMFIT-EHGRLVKTIGLPNDLRYLG---------YMDQDPLRIARLDKl---SSMVWYSVAEW-------SHKY 112
WP_007634927   94 WVSSDNVMLVM-EKGRVVRTLGLDNNLLYTS---------NSEMDPLKLLQFTLkgepKSKTWSRIVDR--------SSD 155 Paraglaciecola...
2IN5_A        120 HFRSAtLSSTFSFAGLETLNIAGRNVLCNVWQEEVTSTR------PEKQWQNTFWVDSATGQVRQSRQXLGAGVIPVEXT 193 Escherichia co...
P32687        135 QVRYAtARSVFKWDGTDTVKVGSDETPVRVLDEEVSTDQ--------ARWHNRYWIDS-EGQIRQSEQYLGADYFPVKTT 205 Escherichia co...
Q5QWW3        139 KVVSReASSEFSVQDKQVLNLPIGPVNTTYVVEKGEFTL------SGQEFVNEFWL-EDDGHVVKSRQTLFPGGDKLTLT 211 Idiomarina loi...
DSC:DSC_07640 132 RYG-AvVRGRLVRRGRETVRILGTDRQLDRFEEVLEGPG--------LRALNQYWVDPASGEIWKSRQLVAPGLS-VEIT 201
WP_014744204  145 LYDIR-ADCKLEEAGQEQVTVGKYTFDTSVYDEDCTVES------MRWRFTNRYWYESESKRIWRSRQVISPELGTMEIT 217 Tistrella mobilis
WP_012187250  182 ----LsFDCTLRAEGAETITILERSVATTRFTEACAGPT--------GTFGNTYWRGAGDGTLWQSQQWAGPDFGHVRIE 249 Dinoroseobacte...
WP_025312414  167 Q---SlHVCSVRATGRETIDIYDIHYTVTRLVETCETPA--------GSYDNQYWV-EANGTVRRSEQWVSPEVGHLLIE 234 Roseibacterium...
WP_011750365  164 ----LsFDCTVGPGPKPGV-----------IVESCEGHG--------ARFQNNFMP--QGGHLPVSRQWAGPRLGYITIQ 218 Paracoccus
1_pfamImport  113 TSGYP-LSMHYRRVGNEVLEVMDKPYTTTIIEESVTASP------SEVQWNNYFWIDEHSGQVRKLKQQLGPSLPVIEMT 185
WP_007634927  156 EYGYP-IESTFNQASADTIQALNLNIETVLYIENLSYMApsnylrFNTNWKNYFWF-TNNGVLIKSIQQDSPLSESLEIT 233 Paraglaciecola...
2IN5_A        194 FL 195 Escherichia coli K-12
P32687        206 -L 206 Escherichia coli K-12
Q5QWW3        212 QV 213 Idiomarina loihiensis
DSC:DSC_07640 202 QL 203
WP_014744204  218 LL 219 Tistrella mobilis
WP_012187250  250 RL 251 Dinoroseobacter shibae
WP_025312414  235 RL 236 Roseibacterium elongatum
WP_011750365  219 TL 220 Paracoccus
1_pfamImport  186 FL 187
WP_007634927  234 YL 235 Paraglaciecola psychrophila
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