Conserved Protein Domain Family
Nucleocapsid-N

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pfam11030: Nucleocapsid-N 
Nucleocapsid protein N
This is the N protein of the nucleocapsid. The nucleocapsid functions to protect the RNA against nuclease degradation and to promote it's reverse transcription. The NC protein promotes viral RNA dimerization and encapsidation and initiates reverse transcription by activating the annealing of the primer tRNA to the initiation site.
Statistics
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PSSM-Id: 287944
Aligned: 2 rows
Threshold Bit Score: 263.668
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O90306   1 MNSMLNPNAVPCQPSPQVVAIPMQYPSGFSPGFRRQRNPGFRPMFNRRRNNNGNQNRGRQNRQRVQNNNRGNIRNRQNNG 80  Breda virus serotype 1
O90306   1 MNSMLNPNAVPCQPSPQVVAIPMQYPSGFSPGFRRQRNPGFRPMFNRRRNNNGNQNRGRQNRQRVQNNNRGNIRNRQNNG 80  Breda virus serotype 1
O90306  81 QRGNRRQYNQPSPNVPFEQQLLMMANETAYAATYPPEMQNVAPTKLVKIAKRAAMQIVSGHATVEISNGTEDSNKRVATF 160 Breda virus serotype 1
O90306  81 QRGNRRQYNQPSPNVPFEQQLLMMANETAYAATYPPEMQNVAPTKLVKIAKRAAMQIVSGHATVEISNGTEDSNKRVATF 160 Breda virus serotype 1
O90306 161 TIKVVMN 167 Breda virus serotype 1
O90306 161 TIKVVMN 167 Breda virus serotype 1
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