Conserved Protein Domain Family
Nab6_mRNP_bdg

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pfam10567: Nab6_mRNP_bdg (491264 is an unknown moldel)
RNA-recognition motif
This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, copurifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G.
Statistics
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PSSM-Id: 491264
Aligned: 7 rows
Threshold Bit Score: 350.625
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_003674489  180 SYKILPSGDDAYRTRSLLFENVVNSIELHT-FMTEFVRFSPIESVYLINHHDsdk--pddDTEC---------------- 240 
XP_003954856  184 SYVILPKGDDAYRTRSLLFENVDNAINLHS-FITNFVKNNSIESIYLVPNKN--------DSNT---------------- 238 
XP_022465647  163 SYKILPKGDDLYRTRSLLLGNIDDMVDLHT-FVSKFVQNNSVESVYITKEGQ--------QPEK---------------- 217 
Q6CSF4        218 QYSILPKGNDTYRSRSLLFTNVNSELDIVE-FLQKVAKNYPIESIYLIKDEDtgddienlNTSNndddpnqnynadnnnn 296  Kluyveromyces...
Q6FXF4        295 NYRVLPSGDDTYKTRSLLFENVQKNDEMLSvFMRLIINYSQVESVYVFQQTDtpskdkesDKDT---------------- 358  [Candida] gla...
XP_003686968  213 SYQILPKGDDTYHTRSLLFENINESIDLHT-FIEKFVNYGLIESVYVVPSYEt------hQNSV---------------- 269 
XP_003679394  169 TYRVLPKGNDEFRTRSLLFENVDGSIDLHS-FVTNFTNYGPVESVYLFKS----------EGDH---------------- 221 
XP_003674489  241 ----------------------------RSILLSFLTREVCLTFYNNVLQRLKEFKAKLKSENLRLSFVSIKY-Q----- 286 
XP_003954856  239 ----------------------------CDIILSFLSRHICLDFYNNVLQRLKEFKKHLNSESLNLNFVSLKY-N----- 284 
XP_022465647  218 ----------------------------YGFLLSFLSVQICLNFYNNVLQRLKEFKEQLKASSLELSFVSMRQ-Rptkve 268 
Q6CSF4        297 skreddkdkesapaltkqiaispsscsqQSYLLSFFTKESCLDFYNNLLQRYAEIKNAVKSDQLAMNFVKIQ-------- 368  Kluyveromyces...
Q6FXF4        359 ----------------------------CCLQLSFLSRQAALDFYNNFLQRLPDFKKKLSSPKLSVSFVSFSY------- 403  [Candida] gla...
XP_003686968  270 ----------------------------KSILLSFTSRSICLDFYNSVLQKLSEYKTQLNSENLKLSFVSLCYlQnnink 321 
XP_003679394  222 ----------------------------VSILLSFFSKAICLDFYNSVLQRLSEYKSDLDSKALTLSFVSLEY------- 266 
XP_003674489  287 ------DENEEEEtnivde-------------psfytKESVYFELSNP-QATRSILIQFKNP------CSE-QELFDKKL 339 
XP_003954856  285 ------KTTRDNQ------------------------GPSLEFNIVTR-DATRSLAIELCSNendsliLEK-EQLFEKIL 332 
XP_022465647  269 gkiyrrFAADDGDg-----------------------MANLHFDMAAQtGATRSIAIEFVDKdv---iLTR-DELLNKKL 321 
Q6CSF4        369 ---------DDEEw-----------------------MANLKMNVISL-GATRSLYVEFADDs-----VTS-DTIWDT-L 408  Kluyveromyces...
Q6FXF4        404 ------VTDEDKDkdkdkdkdintekrnikrsqellkEPALGEEIFSH-DATRSIAIEFYSQ------VEQ-DALFEK-L 468  [Candida] gla...
XP_003686968  322 gngkisVESQKNEtdf-------------------elTSLIQYQVANF-GATRSLCIEFDKR------VDKiDDFIETYL 375 
XP_003679394  267 ------KVSDTSEedidkedds------kpdafnitaAGSLRYDVINR-GATRSIMITFKTP------CSK-DELIDKKL 326 
XP_003674489  340 -KFLNQENNSRYILESIDLVNVTQTENEFPKHYAILTFINILMAMEICDYLKIHGPRYGIQDCMFVQVIPKA------VS 412 
XP_003954856  333 nEILRTDENKRYVLESIDLVSTDKSNKEFGKNYAILSFLNITMAIEIMDYIQVISSKLNIGKCSFVTIQPLIennvmnNS 412 
XP_022465647  322 -KFLSEGNN-RYILEHIAVFKTQHGTKVFGKNYAIITFLSIPMAMEIMDYLKLNIKQLHLTKFFYVQVTHPP------QQ 393 
Q6CSF4        409 -PFLK--NSGKYVVIDVDVVTTDERRKNFGLHYCLLHFLSVTMALEVKELLET--GDEAVSRVSFVTPANSAdkemrrRR 483  Kluyveromyces...
Q6FXF4        469 -PFLDDKDNKRYILEAVDIISAEDAADDFPANYVILTFINIKMAIEVLDYLKANLMTYSVNECFFVSLPGCKsq---rES 544  [Candida] gla...
XP_003686968  376 -PFLSSNANKRYIIESLYIVNNNGKDNEFPAHYVILSFLNISMVIEVLHYIRSKNLSKTIKNCLYVSFDRTK------HA 448 
XP_003679394  327 -EFLKKENNTRYVLESIDLVTADEPSKHFPQNYAVLTFLNIFMAVEILDYIRLHSQKLDISKCFFISIQPQIpdgkrlSV 405 
XP_003674489  413 CVSSKRASIISkdnd-------nndETLSSQQKKNDi---lKNS--SIISLPSAendqVSDEEKLDK------------- 467 
XP_003954856  413 SALSSATNIQSsv-----------sSEGNNNQNNNGstffhKNSinSLLSSESS----VSIDEEVIS------------- 464 
XP_022465647  394 SPAASQKKPHAndte-------snrDTSPPNSKKDQef-fpNNSmlSLVSSESS----TSLADDVDG------------- 448 
Q6CSF4        484 SSAISLKQEASpqmfstdsrsrsrsSNVSLPLSEQV----------STASTDIS----TPIYEEFDG------------- 536  Kluyveromyces...
Q6FXF4        545 STTPVLGHISTegs-----------------------------ksvSEVNLANGgn-tVMIDRELES------------- 581  [Candida] gla...
XP_003686968  449 VSNSNRQSLSKkgts----------------------------dtlNTYTLESP----INHNTEVDMndipsiydeneie 496 
XP_003679394  406 SSASNGRSMESisgn-----------------------yrsKNA--SVTSLESSgs-iISLDQEIDE------------- 446 
XP_003674489  468 LSEKLKSTNIEELILIVDTATYPRPSFLSHDEHL 501 
XP_003954856  465 IADKLKGIKLKDISLDILPRDYPEPEFNFSTDHL 498 
XP_022465647  449 LVNKLKSIELQESTLKLRVEDYPEPLFEQFSEHs 482 
Q6CSF4        537 --------NLTWSTLIVDVSEYKEPIVNEFDHHL 562  Kluyveromyces lactis
Q6FXF4        582 LSDELASLKLEEKCLKIIRSDYPKPEIRSHDDHI 615  [Candida] glabrata
XP_003686968  497 IANKLSELEIQTHTFNLDISNYSNPHIEIRAEHL 530 
XP_003679394  447 MTYKLQSVNSKKNILEVTTNNYKDPSFEGHTDHL 480 
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