Conserved Protein Domain Family
PMD

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pfam10536: PMD (This model is not part of the current CDD release)
Plant mobile domain
This domain was identified by Babu and colleagues in a variety of transposases.
Statistics
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PSSM-Id: 519436
Aligned: 29 rows
Threshold Bit Score: 326.963
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_019072926                 99 GINEAIMCSTYKTrrNHDLFWGLAERWCPSTNSFIFPWGETTITLEDIIVLGGFSVIGEPVS--KPLEtTELMK--LEEN 174 
XP_019066865                 69 GFYGVYRVGLIKL--DHAFITALVERWRPETHTFHFKVGEATVTLQDVAILYGLPIEGEPVVgiDSSK-TPQEWqdLCEQ 145 
XP_006351985                 71 gfrgVVEVGCVPY--DWGVITALIERWRPETHTFHMRTGEATITLQDVELMFGMCVDGDPLLqaGARDiSVQGWqqLIYE 148 
Q9LNG5                       68 GLYGVYKVAFIQL--DYALITALVERWRPETHTFHLPAGEITVTLQDVNILLGLRVDGPAVTg----S-TKYNWadLCED 140  thale cress...
XP_009140611                 59 GFGLFRRIGPMTL--NNSLISALVERWRRETNTFHLPLGETTITLDEVSLVLGLQIDGDPVVg-pKVGdEAAMD--MCGK 133 
Vitvi:Vitvi016213.t01.CDS1   60 gfkHLSMITDMSI--DAPLISALVERWRRETNSFHMRVGEMTITLEDVFLILGLPIDGDPVIg-vTS--HACES--ICRK 132 
F4IFD0                       61 GFGFLRRIPAISL--DNPLISALVERWRRETNTFHFTVGEMTVTLEDIALLLGLGIDGKPVIg-lTY--TTCSA--VCER 133  thale cress...
EEF42018                     80 GFGYLRRIPSISL--DNPLISALIERWRKETNTFHLRVGEMTITLEDVALLLGLAIDGEPVLg-vTY--TSCKP--ICEK 152 
Vitvi:Vitvi020340.t01.CDS1   62 GFGYLRLIPAISL--DNPLISALVERWRRETNTFHLNVGEMTVTLEDVAYLLGLAIDGEPVMg-vTY--TMCDT--ICEK 134 
XP_044390574                 62 GFYHLRFLKMVQL--DHALLNALVERWRRETQTFHLRFGEMAVLLKDVAILTGLRVDGTPVTg----A-TGCHWeqLCLE 134 
XP_019072926                175 LLKLLTqLk--K-TLKscHQEWMKRFMG-------------KGseLEHIAFLFLWLSRYVFGQKFPNTIGGNLLSVAIHL 238 
XP_019066865                146 FLGFRP-Hd-dKlNGSrlDISALESHLEafgeinddtdelvIH--QLARCYMMLMIGGILFPDTPGNKVKLIYLVHLENI 221 
XP_006351985                149 LTGWAPdEn-cFtGVSrlYVGSLVAYMDgldaitdqstevnVQ--QRVRLYLLWLCGGTIFPDKSGCKLSLDFLLDMRDL 225 
Q9LNG5                      141 LLGHRP-Gp-kDlHGShvSLAWLRENFRnlpad---pdevtLK--CHTRAFVLALMSGFLYGDKSKHDVALTFLPLLRDF 213  thale cress...
XP_009140611                134 LLGKLPsAankEvNCSrvKLNWLKRTFSecped---assdvVK--CHTRAYLLYLIGSTIFATTDGDKVSVKYLPLFEDF 208 
Vitvi:Vitvi016213.t01.CDS1  133 LLGNVPrSe--HrSGRmvKLSWLRESFSrcped---aseeqIK--RSTRAYLLYLLGCTIFSSSTGNKVPVMYLQFFENF 205 
F4IFD0                      134 YLGKSPaSn--SaSGGmvKLSWLKDNFSecpdd---asfeeVE--RRTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFEDF 206  thale cress...
EEF42018                    153 FLGKVPdAg--YmSGGmvKLSWLKEYFSqcped---apleeIE--RHTRAYLLYLVGSTIFSTTTGNKVPIMYLPLFEDF 225 
Vitvi:Vitvi020340.t01.CDS1  135 LLGKAPdSg--StSGGmvKLSWLKESFSqcped---apmeeIE--RRTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFENF 207 
XP_044390574                135 LLGQEPp----QiKGGsiNIAWLYDTFSnlpeg---anqseIE--HATRAYIMYQIGCSLFPDPSGTRVHLRYLALLRDF 205 
XP_019072926                239 ARGTRLALGPAVLASIYRDLSLLKETiiastelrmdgsdgdilsLTLQAPLRLVQVWAWERFPGLRP------------- 305 
XP_019066865                222 DQIGRYSWGSAVLACLYRALCRASNSk----------------kKEIGVFLPLLQVWAWERLKIVHPdrlqardgaiifs 285 
XP_006351985                226 STMGTQAWGASALSYLYNCLCRASMSa----------------aSDVCGFLSLLQVWAWERLIPMQPslrppre------ 283 
Q9LNG5                      214 DEVAKLSWGSATLALLYRELCRASKRt----------------vSTICGPLVLLQLWAWERLHVGRPgrlkdv--gasym 275  thale cress...
XP_009140611                209 DRAGRYAWGAAALACLYRALGNASLKs----------------qSNICGCLTLLQCWSYFHLDIGRPekae--------- 263 
Vitvi:Vitvi016213.t01.CDS1  206 DDTKRYAWGAAALAYLYRALGNASLNg----------------qTSICGSITLLQCWSYEHLKVGRPalenfh------- 262 
F4IFD0                      207 DDAGTFAWGAAALAFLYRALGNASVKs----------------qSTICGCLTLLQCWSYYHLNIGRPklnrep------- 263  thale cress...
EEF42018                    226 EKAGNYAWGAAALAFLYRALGRATLKs----------------qSTISGCLTLLQCWSYFHLNIAQPkfyqdp------- 282 
Vitvi:Vitvi020340.t01.CDS1  208 DQASNYAWGAAALSFLYRALGNASLKs----------------qSTVSGCLTLLQCWSYYHLDIGRPrlnqds------- 264 
XP_044390574                206 DASGEMAWGAAVLAHLYRELGKASMKg----------------kANCCAFLTLLQIWAWEHIRIGRPerlenk------- 262 
XP_019072926                306 EPNaMNHg-ePRIARWhGLKR---LK-----IENVRMVLDS-AQDCFQWRPYAT-TVSNwsfpkfyiekeewmvvdsyLD 374 
XP_019066865                286 DDL-PNP---LYASRW-SVQLswkHSpq-yvLSLFRDQLDNlVDEQFVWQPY---VMEN-------------------LP 337 
XP_006351985                284 ----pmsphtALARKW-TRCRvrqNEvr-gvLAICRDVLDNlNDGQFVWEPYSEtIING-------------------LP 338 
Q9LNG5                      276 DGI-DGPlpdPLGCRW-RASLshkENpr-ggLDFYRDQFDQqKDEQVIWQPYTPdLLAK-------------------IP 333  thale cress...
XP_009140611                264 -------asfPLALLWkg-----kGSrsktdLSEYRRELDDlDPTKICWCPYERyENM--------------------IP 311 
Vitvi:Vitvi016213.t01.CDS1  263 ----ksaqdfPRALKW---RRkrkVYsnsksLSVYREALDTlELSDVTFLPYIDmDNAL-------------------IQ 316 
F4IFD0                      264 -----ihdqfPFVLKW---KGkqnGPtanrdVVFYRKALDVmKPTDVVWLPYENmNGGD-------------------MS 316  thale cress...
EEF42018                    283 -----vrdcfPFVHWW---KGkqsAAtvkrdIVFYRKALDSlNPSDVEWLPYNNiDSTL-------------------IP 335 
Vitvi:Vitvi020340.t01.CDS1  265 -----ihvsfPLVLKW---KGkqsGPtanrdLIFYRKALDSlKSSDVEWLPYMNiDSRI-------------------IP 317 
XP_044390574                263 ----slngdqPLGCRW-DVPFknrENvrsidQEFYRHGLDTiTDYQITWDPYKPsLIDG-------------------LP 318 
XP_019072926                375 QE-LQSFAQCLRVCELVGIDCIELYLPHRVAMQFGIDQDLPCTV---------------T-KSHES-PETAWSNYGKPIw 436 
XP_019066865                338 DYcRSGEYFWHAVVPLLCWDVVEMHQPNRVLRQFGMRQNIPDACnfskkhe-ksdrrgrQnTDWSThHASHILVWNDRAn 416 
XP_006351985                339 EWcRRGRDVWMAQTPLICGIYREWHMVDRVLRQFGREQHIPGPCttfdhlhfkrdkrfrVtQQDIHyFEFMAAFWAHRRd 418 
Q9LNG5                      334 LIcVSGENIWRTVAPLICFDVVEWHRPDRVLRQFGLHQTIPAPCdnekalh-aidkrgkSeYDWSArHSRHIGLWEARVs 412  thale cress...
XP_009140611                312 PHvKAKLSLGRSKTTLVCFEKIELHFPDRCLRQFGKRQPIPQKVkrrd-------rknrRhDDLDTsMTAACEEWAERGd 384 
Vitvi:Vitvi016213.t01.CDS1  317 EEmRKQMTIGRSSTMLICFDKAERHLPDRCLRQFGMHRSPPTPVkqwkrk----srdtyEsTDLSKkMASELREWKGRRn 392 
F4IFD0                      317 DRmRKSLLLGRSKTMLISFDKAERHLPDRCRKQFDLFQDIPADVqrwvrk----srgvdGgVDLSNkMESELSEWEMRWe 392  thale cress...
EEF42018                    336 ENvRSSLILGRSKTMLICFDKAERHLPDRCLRQHGMHQGIPKDVqhwerk----srgvdSgIHLSGkMESELNEWSARYh 411 
Vitvi:Vitvi020340.t01.CDS1  318 EDiKSSLIVGRSKTMLICFDKAERHLPDRCLRQYGLRQSIPEEVqrwerk----srgvdGgVDLSGkMELELNEWLDRQl 393 
XP_044390574                319 ALcTLGSAVWQARTPLICFQIVEMHVPDRVLLQFGMMQHIPDPVeaverv----tmqgkTdEDWSTyHEKYIKEWDNRLh 394 
XP_019072926                437 NAklYVP-SRLFEGDVTTQYLSWWK 460 
XP_019066865                417 RV--WEApLAEGFLPYHDDYLKWFR 439 
XP_006351985                419 NI--IRAeLLIEASRPRLEYFDWYH 441 
Q9LNG5                      413 SV--VSGePECSPMDYNDPYMEWYR 435  thale cress
XP_009140611                385 HI--VDGpGGGNVVD-DGAYMEWYA 406 
Vitvi:Vitvi016213.t01.CDS1  393 HI--IKDdLDG---D-ESRYMDWYL 411 
F4IFD0                      393 NI--VPDdVQG--VD-EADYMRWYl 412  thale cress
EEF42018                    412 HI--VQDd-DG--VD-EIEYMNWYL 430 
Vitvi:Vitvi020340.t01.CDS1  394 NI--VEDd-GG--VE-ESEYMQWYL 412 
XP_044390574                395 SVagLHNaVNSDPTHARNCYLEWYw 419 
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