Conserved Protein Domain Family
PMD

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pfam10536: PMD 
Plant mobile domain
This domain was identified by Babu and colleagues in a variety of transposases.
Statistics
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PSSM-Id: 402250
View PSSM: pfam10536
Aligned: 32 rows
Threshold Bit Score: 308.095
Threshold Setting Gi: 971539689
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_015163307   69 GLYGIYRSNRPSIDRSLITSLVERWRPETHTFHFRTGEATITLQDVEVLYGLPVNGDPVLgdESIR-TIGDwqnICQRLL 147  potato
XP_009149244   50 GFGWFRLIGSISLNNSLISALVERWRRETNTFHFPCGEMTITLDEVSLLLGLAVDGKPVVtsVKERdEDPSq--VCQRLL 127  field mustard
XP_009140611   59 GFGLFRRIGPMTLNNSLISALVERWRRETNTFHLPLGETTITLDEVSLVLGLQIDGDPVVg-pKVGdEAAMd--MCGKLL 135  field mustard
XP_019077711   60 gfkHLSMITDMSIDAPLISALVERWRRETNSFHMRVGEMTITLEDVFLILGLPIDGDPVIg-vTS--HACEs--ICRKLL 134  wine grape
F4IFD0         61 GFGFLRRIPAISLDNPLISALVERWRRETNTFHFTVGEMTVTLEDIALLLGLGIDGKPVIg-lTY--TTCSa--VCERYL 135  thale cress
EEF42018       80 GFGYLRRIPSISLDNPLISALIERWRKETNTFHLRVGEMTITLEDVALLLGLAIDGEPVLg-vTY--TSCKp--ICEKFL 154  castor bean
KRH46089       67 GFGYLRSIPAISLDNPLISALVERWRRETNTFHLNVGEMTVTLKDVALLLGLAIDGEPVIg-iTY--TACSs--VCEKYL 141  soybean
XP_015166227   71 gfrgVVEVGCVPYDWGVITALIERWRPETHTFHMRTGEATITLQDVELMFGMCVDGDPLLqaGARDiSVQGwqqLIYELT 150  potato
Q9LNG5         68 GLYGVYKVAFIQLDYALITALVERWRPETHTFHLPAGEITVTLQDVNILLGLRVDGPAVTg----S-TKYNwadLCEDLL 142  thale cress
EMS47434       62 GFYHLCFLKRVQLDHALLNALVERWRRETQTFHLRFGEMAVLLKDVAILTGLRVDGTPVTg----A-TGCHweqLCLELL 136  Triticum urartu
XP_015163307  148 GFIP-RPQ-NFNRSSLKVTALNAHMLeqqqlpnlatqdmINQMARCYMFWMIAGMMMADTSGNyLKLMFLPMLEDLSVVS 225  potato
XP_009149244  128 GKLPqG---ELSGNRVTARWLKESFAecpkg---atkeeVEFHTRAYLIYLVGSTIFATTDPSkISVDYLILFEDFEKAG 201  field mustard
XP_009140611  136 GKLPsAANkEVNCSRVKLNWLKRTFSecped---assdvVKCHTRAYLLYLIGSTIFATTDGDkVSVKYLPLFEDFDRAG 212  field mustard
XP_019077711  135 GNVPrSE--HRSGRMVKLSWLRESFSrcped---aseeqIKRSTRAYLLYLLGCTIFSSSTGNkVPVMYLQFFENFDDTK 209  wine grape
F4IFD0        136 GKSPaSN--SASGGMVKLSWLKDNFSecpdd---asfeeVERRTRAYLLYLVGSTIFSTTTGNkVPVMYLPLFEDFDDAG 210  thale cress
EEF42018      155 GKVPdAG--YMSGGMVKLSWLKEYFSqcped---apleeIERHTRAYLLYLVGSTIFSTTTGNkVPIMYLPLFEDFEKAG 229  castor bean
KRH46089      142 GRSPeSG--YTSGGMVKLSWLKEFFSrcped---aplevIEQHTRAYLLYLVGSTIFSTTTGNkVPVMYLPLFENFDRCG 216  soybean
XP_015166227  151 GWAPdENC-FTGVSRLYVGSLVAYMDgldaitdqstevnVQQRVRLYLLWLCGGTIFPDKSGCkLSLDFLLDMRDLSTMG 229  potato
Q9LNG5        143 GHRP-GPK-DLHGSHVSLAWLRENFRnlpad---pdevtLKCHTRAFVLALMSGFLYGDKSKHdVALTFLPLLRDFDEVA 217  thale cress
EMS47434      137 GQEP---P-QIKGGSINIAWLYDTFSnlper---anqseIEHATRAYIMYQIGCSLFPDPSGTrVHLRYLALLRDFDASG 209  Triticum urartu
XP_015163307  226 SYSWGSATLACLYHFLCKASQSNQNEIAGFLPLLQIWAWERVTVLKPqviaqrdtennflAGLPRG---PHATRWFAHFs 302  potato
XP_009149244  202 EYAWGAAALAFLYRQIGNASQRSQSIIGGCLTLLQCWSYFHLNIDRPkrtt---------------rqfPLALLWkgrqq 266  field mustard
XP_009140611  213 RYAWGAAALACLYRALGNASLKSQSNICGCLTLLQCWSYFHLDIGRPekae---------------asfPLALLWkgkgs 277  field mustard
XP_019077711  210 RYAWGAAALAYLYRALGNASLNGQTSICGSITLLQCWSYEHLKVGRPalenfh----------ksaqdfPRALKW--RRk 277  wine grape
F4IFD0        211 TFAWGAAALAFLYRALGNASVKSQSTICGCLTLLQCWSYYHLNIGRPklnrep-----------ihdqfPFVLKW--KGk 277  thale cress
EEF42018      230 NYAWGAAALAFLYRALGRATLKSQSTISGCLTLLQCWSYFHLNIAQPkfyqdp-----------vrdcfPFVHWW--KGk 296  castor bean
KRH46089      217 QYAWGAAALSFLYRALGNASLKTQSTISGCLTLLQCWSYFHLNIGRPklnlel-----------mhdrfPFVLRW--KGk 283  soybean
XP_015166227  230 TQAWGASALSYLYNCLCRASMSAASDVCGFLSLLQVWAWERLIPMQPslrppre---------pmsphtALARKWTRCRv 300  potato
Q9LNG5        218 KLSWGSATLALLYRELCRASKRTVSTICGPLVLLQLWAWERLHVGRPgrlkdv--gasymDGIDGPlpdPLGCRWRASLs 295  thale cress
EMS47434      210 EMAWGAAVLAHLYRELGKASMKGKANCCAFLTLLQIWAWEHIQIGRPerlenk----------slngdqPLGCRWDVPFk 279  Triticum urartu
XP_015163307  303 wtnt-tkhvLKVFRDALDSMtedQFIWEPYSDdLIENLPDYcRIGRDIWRVRAPIFCWDVVEVHLPDRVMRQFGLKQTIP 381  potato
XP_009149244  267 s---rskndLFKYRKALDDLdpsHVSWCPFEGdLDI-VPQSfKDNLLLGRSRTKLIAPKVVEWHLPDRCMKQFGLCQVIP 342  field mustard
XP_009140611  278 ----rsktdLSEYRRELDDLdptKICWCPYERyENM-IPPHvKAKLSLGRSKTTLVCFEKIELHFPDRCLRQFGKRQPIP 352  field mustard
XP_019077711  278 rkvysnsksLSVYREALDTLelsDVTFLPYIDmDNALIQEEmRKQMTIGRSSTMLICFDKAERHLPDRCLRQFGMHRSPP 357  wine grape
F4IFD0        278 qngptanrdVVFYRKALDVMkptDVVWLPYENmNGGDMSDRmRKSLLLGRSKTMLISFDKAERHLPDRCRKQFDLFQDIP 357  thale cress
EEF42018      297 qsaatvkrdIVFYRKALDSLnpsDVEWLPYNNiDSTLIPENvRSSLILGRSKTMLICFDKAERHLPDRCLRQHGMHQGIP 376  castor bean
KRH46089      284 qsgptanrdVVFYRKSLDSLkpcDVEWLPYRNmDSMVIPEYiKSTLILGRSKTMLICFDKAERHLPNRCLRQYGMLQSIP 363  soybean
XP_015166227  301 rqne-vrgvLAICRDVLDNLndgQFVWEPYSEtIINGLPEWcRRGRDVWMAQTPLICGIYREWHMVDRVLRQFGREQHIP 379  potato
Q9LNG5        296 hken-prggLDFYRDQFDQQkdeQVIWQPYTPdLLAKIPLIcVSGENIWRTVAPLICFDVVEWHRPDRVLRQFGLHQTIP 374  thale cress
EMS47434      280 nrenvrsidQEFYRHGLDTItdcQITWDPYKPsLIDGLPALcTLGSAVWQSRTPLICFQIVEMHVPDRVLLQFGMMQHIP 359  Triticum urartu
XP_015163307  382 TPFlfdathfh-hdrrgrpnTNWKLEHAQWLPFWNQRLqYI--CDApFNREPLRYDDPYLIWFK 442  potato
XP_009149244  343 GEVphrks-------ekthdEDLLEDMNTADEEWMRRReNI--VENeGGN--VD-ETEYMQWFN 394  field mustard
XP_009140611  353 QKVkrrdr-------knrrhDDLDTSMTAACEEWAERGdHI--VDGpGGGNVVD-DGAYMEWYA 406  field mustard
XP_019077711  358 TPVkqwkrks----rdtyesTDLSKKMASELREWKGRRnHI--IKDdLDG---D-ESRYMDWYL 411  wine grape
F4IFD0        358 ADVqrwvrks----rgvdggVDLSNKMESELSEWEMRWeNI--VPDdVQG--VD-EADYMRWYl 412  thale cress
EEF42018      377 KDVqhwerks----rgvdsgIHLSGKMESELNEWSARYhHI--VQDd-DG--VD-EIEYMNWYL 430  castor bean
KRH46089      364 DDVerwerks----rgvdggVDLSGKMESELNEWMDRQvSI--VDGd-EG--AD-ESEYMEWYM 417  soybean
XP_015166227  380 GPCttfdhlhfkrdkrfrvtQQDIHYFEFMAAFWAHRRdNI--IRAeLLIEASRPRLEYFDWYH 441  potato
Q9LNG5        375 APCdnekalha-idkrgkseYDWSARHSRHIGLWEARVsSV--VSGePECSPMDYNDPYMEWYR 435  thale cress
EMS47434      360 DPVeavervt----mqgktdEDWSTYHEKYIKQWDNRLhSVagLHNaVNSDPTHARNCYLEWYw 419  Triticum urartu
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