Conserved Protein Domain Family
Rod_C

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pfam10493: Rod_C (This model is not part of the current CDD release)
Rough deal protein C-terminal region
Rod, the Rough deal protein, displays a dynamic intracellular staining pattern, localising first to kinetochores in pro-metaphase, but moving to kinetochore microtubules at metaphase. Early in anaphase the protein is once again restricted to the kinetochores, where it persists until the end of telophase. This behaviour is in all respects similar to that described for ZW10, and indeed the two proteins function together, localisation of each depending upon the other. These two proteins are found at the kinetochore in complex with a third, Zwilch, in both flies and humans. The C-terminus is the most conserved part of the protein. During pro-metaphase, the ZW10-Rod complex, dynein/dynactin, and Mad2 all accumulate on unattached kinetochores; microtubule capture leads to Mad2 depletion as it is carried off by dynein/dynactin; ZW10-Rod complex accumulation continues, replenishing kinetochore dynein. The continuing recruitment of the ZW10-Rod complex during metaphase may serve to maintain adequate dynein/dynactin complex on kinetochores for assisting chromatid movement during anaphase. The ZW10-Rod complex acts as a bridge whose association with Zwint-1 links Mad1 and Mad2, components that are directly responsible for generating the diffusible 'wait anaphase' signal, to a structural, inner kinetochore complex containing Mis12 and KNL-1AF15q14, the last of which has been proved to be essential for kinetochore assembly in C. elegans. Removal of ZW10 or Rod inactivates the mitotic checkpoint.
Statistics
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PSSM-Id: 519410
Aligned: 13 rows
Threshold Bit Score: 641.013
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_007489960 1579 TMTMSSAAQIRLPFHLIFfgKVQNFWKILSAELREESFPTFLLIAKLMKVSLDSLYVSTVK-QVFEKSLKpKLLKQVQAK 1657
Q8C3Y4       1579 MITLPPAAHTRLPFHLILfgTAQNFWKILSSELSEESLPTLLLIAKLMKFSLDTLYVSTAK-HLFEKNLKpKLLKSAQAR 1657 house mouse
2_pfamImport    1 GMALPPAAQTRLPFHMIFfgASNYFFKIIAAELSEDSFHKLLLMSKLMKVSLNTLYLLAAD-HLFQQKLKpKILDAMRSE 79  
XP_049538880 1299 GDMLPEIAKYRYPFMLIV---RQPLKQLLKEEIAIDNYQKLLVLVE-MKCALEGFDCNEMN-DNFCKSAVvNSINEYKIQ 1373
XP_002069804 1537 S-VLPKIAQYRLPFKPIV---EKPLKDILDYDINVDNCQSWFPLIQ-MCTALKGSKDSPQNcDYFCMSAVkNSMDELKCK 1611
XP_002053895 1543 G-VLPKIARYRLPFKPIV---EKPLKDILDSELNVDNCQSWFPLIL-MCTSLKNSKDISQNcDYFCMAAVkNSIAEYKSK 1617
Q9V9W7       1542 G-VMPKISRYRLPFKPIV---EQPLKDILDSELNVDNCQSWFPLIQ-MYTALKGSKDSSQNcDYFCMSAVkNSISEYKSK 1616 fruit fly
1_pfamImport    1 SLPRSPLTHTRLPFHLIFfkTSLYFWKIISAELSEETFPTLLLISKLMKVCLDKLYMSAVN-HVFDKRLKpQSLKPSNGR 79  
3_pfamImport    1 GLMPNPLSSSRLPFHLLM--QTKHFWKII-PELSEETFPTLLLISKLMKVSLDKLYMSAAN-HVFEKKMKpLILEQRKKA 76  
XP_011613979 1570 GLLPNPLSNRRLPFHLLM--QNKHYWKIISPELSEETFPTLLLISKLMKVSLDKLYMSAAN-HVFeKKMKpLLLEQRKKG 1646 torafugu
XP_028914361 1577 M-ALSPAAHTRLPFHLIFfgTMHNFWKllASELSEESFPTLLLISKLMKASLDTLYMSTAK-HVFEKKLKpRLLKLAQTN 1654 platypus
XP_058137299 1578 VITLPSAAQTRLPFHLIFfgTAQNFWKIISTELSEESFSTLLLISKLMKFSLDTLYVSTAK-HVFEKKLKpKLLKLTQAK 1656 nine-banded a...
XP_064424237 1588 AICLSSASQQRLPFHLLFfnTTQCFWNIISAEITDESFPTLLLISKLMKVSLDKLYMSAVK-HVFEKTLKpNVFKQSKEG 1666 coelacanth
XP_007489960 1658 GSTPN--------NKEIAKTFQTLQSYLLSIANPEWAVAVAINLAQDIP--EGCYKI---TILKFCLYLAEKWLKNISSQ 1724
Q8C3Y4       1658 SSTLM--------SKEVDKLMQTLESYLLSIVNPEWAVAIAISLTQEVP--EGPFKM---SSLKFCLYLAERWLQNIPPQ 1724 house mouse
2_pfamImport   80 CWEAV--------DKETAKIVQTITSYLHCITNPKWATGLAYKMAEELP--PGMESIrdcSLLEICLNLGLRH----WWS 145 
XP_049538880 1374 NKEMAlahndwhrQAKNKAFLQSILRIVDSIKDLSSRLFILYYITCNAS--DGDDQV---NAAYACYTFARKHETELASM 1448
XP_002069804 1612 SNSDAws-----lRPTNNAFLQAVLRLAKNMNSHNKAFLMLYYVSNYVR--SGADQV---EAAYECWKFAKKH-ALQLND 1680
XP_002053895 1618 NDSESws-----lHPTNNAFLKSILRLVKNVHSPSKVFLILYFVAGYAP--EGADQV---EASYECWKYAKDH-GSLTND 1686
Q9V9W7       1617 NDSESws-----lHPTNNAFLQSILRLVEKVNNPNKAFLILYFVSNYAR--DGADQV---EASYECWKFVKEK-GHLITD 1685 fruit fly
1_pfamImport   80 KPHVM--------TKETIKTMETIKTYLLSIKNPEWAAAAAHKIAQELP--TGILKT---TSLNFCLLLAEKWLKTSSPE 146 
3_pfamImport   77 QGHGY--------NKETLKVAKTMMKYIQCIQSLEWAAATAHKITQELP-----------------------------PQ 119 
XP_011613979 1647 HGHFY--------NKETLKVAKAMMTYIHCIQSAEWAAATAHRITQELP--PGYEKT---QSLRFCLALGDAWLKDPNLE 1713 torafugu
XP_028914361 1655 CSTLD--------NKETAETAQAIQSYLLSIVNPEWAVAIAVKIAQDLP--VGPDKI---SAWKFSLHLAEKWLRNSPAE 1721 platypus
XP_058137299 1657 SSTLI--------SKEITKITQTIESYLLSIVNPEWAVAIAISLAQDIP--EGSFKM---SSLKFCLYLAERWLENIPPQ 1723 nine-banded a...
XP_064424237 1667 RYPRI--------AKETIKTVKTIQSYLLSITK--LEWAAAICHRMVQDlpTGPEKN---YALKFCMHLTQKWQDSLTPQ 1733 coelacanth
XP_007489960 1725 DETHEKAEALLKKLRVQYQRSGTETVLITHGLGSPEHLRLLGKPAQLIASLYEHGSILPRIQGPADKDCPDIHAAAKEIA 1804
Q8C3Y4       1725 DETCEKAKALQKKLCLQVRLSGTEAVLIAHKLNDQEYLRVIGKPAHLIVSLYEHPSISERLCTTSGKDYPDIHTAAKEIA 1804 house mouse
2_pfamImport  146 DELREKAEESLKKLQVQHRHSATEAVLMVHKLNSEEHRKLLGAPGKLIVSLYQHSSIPESFQDPMGRDYPDVHAAAKEIA 225 
XP_049538880 1449 PEAKEK----LEKIFRKYPLLKTQQLLQQNGVTEEKQFQLVRNPHELIMALYSDSCFQQV----------KVNELVSVIG 1514
XP_002069804 1681 PMVKEK----VIKIRSKYPKQKTMLLLHTYGLTDEKLLQLVSDPRELISSLYHNDLIIKSGTI-------DINALVKEIA 1749
XP_002053895 1687 PKCQDQ----LAKIKRRYPIQKTQHLLYVYGMTDEKLLRLVEHPIELIHSLYHHELILKSSKV-------DINALVKEIC 1755
Q9V9W7       1686 PKSREQ----VAKVKRRYPIQKTQHLLYVYGLTDEKLLRQVENPTELIQALYHHELILKSSKV-------DINALVAEIA 1754 fruit fly
1_pfamImport  147 DPAHAKAEIFLEKLKLQYQRSATENTLISYHLNSPEYLKSTGFPAKLIVSLYEHSSIEQRLKNPAGRNYPDIHAVAREIA 226 
3_pfamImport  120 EAARARGETFLSKLKLQFQRSATENMLISSQLSSPELLKLSGLPARLIMALHEHSSVEQRYRETGGQTFP-IHAAVREIA 198 
XP_011613979 1714 EAARARGETFLSKLKLQFQRSATENALISSQLNSPELLKLTGLPARLIVALYEHSRLEQYYRDSGGQICPDIHAVVKEIA 1793 torafugu
XP_028914361 1722 TESHDKAEALLKKLRIQYQTSATETVLITHKLNTAEYLKLSGKPAHLIVSLYEHSSIDQRIKSPTGQDYPDIHAAAKEIA 1801 platypus
XP_058137299 1724 DETREKAEALLKKLHIQYRRSGTEAVLIAHKLNTEEYLRVIGKPAHLIVSLYEHPSINQRSQNSSGKDYPDIHTAAKEIA 1803 nine-banded a...
XP_064424237 1734 DEAREKAGFLLNKLTVLYQRSATENVLIAHSLNSAQYLKLTDMPSKLIESLFGHDSIEQRVRNPIGRDYPDIHAAANEVA 1813 coelacanth
XP_007489960 1805 EINNLDLEKIWDVLLEKWLCPATQT-----NEIPSEFF-NLQ------------------GDEALQRVLYLLQIRPIDYS 1860
Q8C3Y4       1805 EVNEVNLEKIWDMLLEKWLCPSTVP-----SEKASEFF-ELE------------------EDEVLHRVVYLLQARPVDYC 1860 house mouse
2_pfamImport  226 KINDLDMTTIWNVLLEKWLCPTEFG------YEPRRMGqRWH------------------QLLCFHRVIYLLQAHPEDSR 281 
XP_049538880 1515 ELYELDIEGIQMQLLQKWLTIFGGTtsensASMLEETLyDDHnmsdas------qedeegVHEYMKRAYYILSSWERSKS 1588
XP_002069804 1750 DLHELDLDAIQFSLLQKWLSVTMEQt---dVTVHEETLvEDPfgtpndgidavngltvniTSENVIRAVYVLSSWPKSDA 1826
XP_002053895 1756 ALHELTLSNIQFKLLQNWLSVTMETt---dGTILEETFlEDQnwpehgsn--ghgddtgnASENVVRAFYLLSSWPKSEA 1830
Q9V9W7       1755 KLHDLCLATIQYRLLQKWLALTMESag--dGTILEETFmEEQnwpeqang--aessnsqdASENVNRAFYILSSWPKAEA 1830 fruit fly
1_pfamImport  227 SINNIDLSKIRDLLLDKWLCQSTAP-----AVKVSTSF-NIQ------------------EDPELMRVIYLLQMYPMDFS 282 
3_pfamImport  199 TINNVDLGKIRNMLLEKWICKTGPA------------------------------------------TVYMLQSYPVDVA 236 
XP_011613979 1794 TINNVDLLKIRNMMLEKWICKTGPAvt--kDAGNYESVsNIE------------------EDPDLMRVVYILQPYPMDDA 1853 torafugu
XP_028914361 1802 DINSVNLEKIRDKLLEKWLCPNRQT-----GEKSADFL-DLQ------------------GDEEFRRVIYLLQPLPIDYS 1857 platypus
XP_058137299 1804 EVNEINLEKVWDMLLEKWLCPTTKH-----GEKPSELF-ELQ------------------EDEALRRVLYLLLSRPIDYS 1859 nine-banded a...
XP_064424237 1814 EINNLHMNKIRDVLLEKWLCPSTQPvv--dGKKTQDFFsNIQ------------------EDPELIRVLYLLQPYPLDYS 1873 coelacanth
XP_007489960 1861 SRMLFLVATSSVSPFTVG-----QL-TFAYRRRALHCLLCLADRETIES--------LFKKPYEEVKCF-LKCITFLAAF 1925
Q8C3Y4       1861 SRMLFVFATSATSTLGMR-----QL-TFAHKARALQCLLYLADKETIES--------LFKKPIKEMKSY-LKCITFLASF 1925 house mouse
2_pfamImport  282 LRILHRWTVSEISPVGLN-----QL-SFAHRSRALKCLLYIADPPAVES--------LFKKPVENVKQF-LKCLIYLAEF 346 
XP_049538880 1589 VEFLVAQLNTSTDGVS--------S-DVGKQLHIYQCFSKLVDEECN----------PYQTFFTQQRYVaLKCVHLLKSL 1649
XP_002069804 1827 VKFLIGFIFKGGS-----------V-NTSTQLQMYECFLKLNDGSN-----------IFADIITQKQFItIKCVDDLKAL 1883
XP_002053895 1831 VQFLVGLIFKGGP-----------V-NTSTQLQMYECYSKLNDGSN-----------SFSNTINQREFItIKCVHKLKAL 1887
Q9V9W7       1831 VKFLVGLIFKGGS-----------V-NTSTQLQMYECYSKLNDGSN-----------SFTNTISQRQFIsIKCVHELKAL 1887 fruit fly
1_pfamImport  283 ARMLYAIVTAEVSPISNSg---pRL-TFGNRSRALMCLIQIADTKTLES--------LLKTSIEKIKHY-LKYCIYLSEF 349 
3_pfamImport  237 TRLLSPILCAETWFLQPLsssgpRL-TFCHRTRALLCLIRLADAESLEA--------QLQIPRSKF-CY-LKSYIFVSQL 305 
XP_011613979 1854 VCLLKPILSAETWPLSSSg---pRL-TFCHRTRALLCLVRLADAATLDT--------QFHISRNKIQYY-LKCYIFVSQL 1920 torafugu
XP_028914361 1858 SRMLYVIATSASS-IGVN-----QL-TFAHRRRALQCLLYSADTETIES--------VFKKPIEEVKCF-LKCITFLAEF 1921 platypus
XP_058137299 1860 SRMLFVFATSATSTLGMR-----QLtFAHRTRa-lQCLLYLAD--KETIeslfkkpiAEV------KSY-LKCMTFLASF 1924 nine-banded a...
XP_064424237 1874 TRILFAIATSATSPISVV-----QL-TFAHRSRALQCLIHIAGTEAVVA--------LFKKPIEKVKYY-LKCCIYLAEF 1938 coelacanth
XP_007489960 1926 EMLNIPLTYESFHNS--PKEGMIKGLWKNHSHEPMAVRLVTELSLEYKVYDTQLWSGLLQKLLGFNMISYLRNVLTAISN 2003
Q8C3Y4       1926 ETLNIPITYELFCNS--PKEGMIKGLWKNHSHEPMAVRLVAELCLEYKIYDLQLWNGLLQKLLGFNMIPYLRKVLSCISS 2003 house mouse
2_pfamImport  347 EVLNIPYTYESFHST--PKEGLVKGLWKNHSHKPMAVKLMTELSLDYQVHDAQLWNGLLQKLMSFQMISHLRKVLREISG 424 
XP_049538880 1650 GLGNL--SIAKFEET--DKMALLKMLWQSHASNPKGLEVIALICIGYNIYLPQIWNGILKQMARLGMVANLRALIDIVTA 1725
XP_002069804 1884 GYNC---NIDKFKDDqcNKIDILKMIWQRNAQNPLSLVVMANICLGFDIHLPKIWNGILKRMVIFHMIQELNALLDELSC 1960
XP_002053895 1888 GYNS---NIEKFADDncDKINILKMVWQRNAQNPLSLEVMADICLGFDIHLPKIWNGILKRMVIFNMVRELNALVDVLSC 1964
Q9V9W7       1888 GYKS---NLEKFSDDhcNKIDILKMIWQRNAQNPLSLEVMANICLGFDIHLPQIWNGILKRMVMFHMVRELNALLDVLSC 1964 fruit fly
1_pfamImport  350 EVLNIPYTVESFHSS--PKEGMIKGLWKNHSHEPRAVRLVAELSLEYQVYDPQLWNGVLQKLISFSMTCYLRKVLVALTA 427 
3_pfamImport  306 EALNIPYTIQSFLSS--PKDGLVKGLWKNHSHEPQ--------------------------------ISHLQMVLEAIVA 351 
XP_011613979 1921 EALNIPYTVQSFLSS--PKEGLVKGLWKNHSHEPQAVRLVADLCLEYQVYDPQLWNSLLQKLLSFNLISHLQGVLEAVVS 1998 torafugu
XP_028914361 1922 ETLNIPYTYESFHSS--PKEGMIKGLWKNHSHEPMAVRLVAELSLEYKVYDPQLWNGLLQKLLGFNMINYLRNVLAAISS 1999 platypus
XP_058137299 1925 ETLNIPITYELFCNS--PKEGMIKGLWKNHSHESMAVRLVTELCLEYKVYDLQLWNGLLQKLLGFNMIPYLRKVLTAISS 2002 nine-banded a...
XP_064424237 1939 EILNIPYTFESFHSG--PKEGMIKGLWKNHSHEPRAVRLVVELSLEYQVFDPQLWNGVLQKLLGFNMISYLRKVLVAITG 2016 coelacanth
XP_007489960 2004 IRSLWQIPYFGRAWQRVSQIPLISASCPLNPTQLLACRESLVVLLECPVSMDLDMVGVAKQFSQLELPAFALACLLLMPH 2083
Q8C3Y4       2004 IHSLWQVPYFSKAWQRVIQIPLLSASCPLRPSQLADCCDSLVAILECPVSDDLDMMGVAKQYVQLDLPAFALTCLTLMPH 2083 house mouse
2_pfamImport  425 ICSLWQIPNFSRAWQTVICAPLLSG----------KLSSYFSFPKLCPLTTHLDLLGIAKQYVQLQLPAFAFGCLLLIPQ 494 
XP_049538880 1726 KRQLFGLEGYRMAWELLIEQPFRSASREQSLAEDALLARSLVMVQRCPISFRLNLLEIARECVTVNRVNMA--AVLIGFA 1803
XP_002069804 1961 KAQLLHLDGLAVAWDYVLCHPLKNASHTHSFEQDEQLHKVLLRLQGCPVVHALNLQQFAQHCKLIQRPHMA-AALLAFCQ 2039
XP_002053895 1965 KPQLLHLDGLALAWDCVLTHPLKNAVQTRSIALEERLQKTLLRLQGCPVVDALNLYQFAELCMLIHRPHMA-ATVLIYCQ 2043
Q9V9W7       1965 RPHLLHLDGLAQAWDYVLCHPLQNAVELRSFKQEEVLHKTLLRLQGCPVVHALNLLQFAQLCIVVHRPHMA-ASLLSFCQ 2043 fruit fly
1_pfamImport  428 VHSLWQVPNFIRAWKSVILAPFLSASIPLSPQQLEMFYQTFVLLLKCPVLFDLDLIGIAKQFAQFDLPAFTLGSLLLIPC 507 
3_pfamImport  352 VPTLWE-------------------SVPLSPDQQAMLYRTFVLLL-CPFLLNLDLIGIANRFAQFNLHAFALGTLLLLPC 411 
XP_011613979 1999 VPALWEIPSFSRTWRSTILAPFVSASLPLSPDQQKTLYRSFVLLLKCPFLLDLDLVGIANRFAQFSLPAFALGTLLLIPS 2078 torafugu
XP_028914361 2000 VHSLWQIPYFSKSWQRVILIPLLSASCPPSPTQLQDCCESLVALLECPVSTDFDVTGVAKQFVQLDLPAFALACLLLMPQ 2079 platypus
XP_058137299 2003 IHSLWQVPYFSKAWQRVIQIPLLSASCPLSPSQLSDCCESLIAVLECPVSDDLDMIGVARQYVQLELPAFALACLMLMPH 2082 nine-banded a...
XP_064424237 2017 VQSLWPIPVFSRAWRSAILAPFLSASCPPSPKQLEACYESFVLLIKCPVLGDLDLVGIAKQYVQLDLPAFAVGSLLLIPY 2096 coelacanth
XP_007489960 2084 SDKRDQQLQNFLGWCNPEVILQQIDEHMNTGQLAGFACQVKGFIL 2128
Q8C3Y4       2084 SEKRHQQIKNFLNSCDARIILQQIEEHMNTGQLAGFSHQIGSLVL 2128 house mouse
2_pfamImport  495 LEKRSQVIQDLLAKCSLEAMAQQVDEYMSWGEVAGLASQVGTKDN 539 
XP_049538880 1804 DSEQKETLKKLIANNAVPNLKDQIQEL----EEFGLVTTITKAVC 1844
XP_002069804 2040 SSQQREDIKKLILSRPMDNLREQILDL----EDAGILPVILDFAL 2080
XP_002053895 2044 STEQREKIKKLITSRHVDNLRQQILEL----EDAGLIPMVLNFAL 2084
Q9V9W7       2044 SSEQRQKIKKMIHSHPVENLRQQILDL----EDAGILPVVLNFAL 2084 fruit fly
1_pfamImport  508 SEKKEQQVQGFLSSSNLVTVLQQVEEHMNTGEVAGFSTQIKDMVL 552 
3_pfamImport  412 ANKKAQQIQGFLSMCNPVAVLEQVDEFMNTGELAGIPSQIRETVL 456 
XP_011613979 2079 AQKKAQQIQGFLSVCNPVAVLEQVDELMNTGELAGIPSQISKTVL 2123 torafugu
XP_028914361 2080 SEKKEQQIKNFLDLCNPETILQQVDEHMKTGELAGFASQIRSFIL 2124 platypus
XP_058137299 2083 SEKRHQQIKNFLGSYNPQTILQQLEEHMNIGQLAGFSHQIRSLIL 2127 nine-banded armadillo
XP_064424237 2097 SEKREQQIQGFLSLSNPETVLQQVVDHMTTGEVAGFASQIKKLLL 2141 coelacanth
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