Conserved Protein Domain Family
Elong_Iki1

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pfam10483: Elong_Iki1 (This model is not part of the current CDD release)
Elongator subunit Iki1
This family is a component of the RNA polymerase II elongator complex. This complex is involved in elongation of RNA polymerase II transcription and in modification of wobble nucleosides in tRNA.
Statistics
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PSSM-Id: 491199
Aligned: 85 rows
Threshold Bit Score: 141.562
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EPE02265      15 LLQKLLNLRDGvSPLTLVLDTPREPGTPLLEEMMLRAK-TGaggaaR-TKVVYVCSN------LAPRr------------ 74 
XP_004999001   2 MLADLLALRQTtTSL-IVQDELECRGDVILAQLARQLR-SR-----G-GKCVVVCGErg--adVFDG------------- 58 
XP_006627641   1 MLLEIIDGTEG-GGLVVIKDSVNCPGRCLLKSCVNAAL-RR-----K-ESVHVLGFD------VSEEelragldgeaaks 66 
XP_003955591  11 LLKRVLSLTEP-SSFILCLDSVSQSSSYLIEELVFNANkSA-----G-TNIIFVSFE------TNDK------------- 64 
XP_056088281  11 LFKRVLSLTES-SPLILCLDSMAQTSHRLIQEFIHQSKsKG-----NeCPVVYISFE------TVNV------------- 65 
XP_003669258  11 LLKRILSLSEA-TPLLLCLDSIPQTANYLINEIVHHSRnTL-----N-LETIFVAFE------TLNK------------- 64 
XP_003677064  11 LLKRVLCLTES-SPLILCLDSVAQTSNHLIDEIIHNTKtNS-----S-LKVIYVAFE------TLNK------------- 64 
CCG82820       9 LISRILQFKDI-SPLLILTDSIFQSAAPLLDHLASSAR-SA-----K-FRVITINWRresdvcTMTS------------- 67 
XP_013025642   5 LLDRCL--REL-SPLTVLKDDIQQTAKPLLHFMIQSAA-SR-----N-IKVLFVSYE------TLEAn------------ 56 
O94495         5 LLNRCI--RDL-SPLTVLKDNLQQTAKPILNYYAKNAA-SR-----G-IKVLFISYE------TLEKe------------ 56  Schizosaccharom...
EPE02265      75 --------qSPHVD----VYIER--RDE-PsLEAFQARILKEVPPPPAPtssssspssssggTRCLIIIDSLG-PIaqsd 138
XP_004999001  59 ---------PVTSV----PWLDAtaSA--DfVTRIAEEAEA---------------------QQACVFVDSFG-SLa--- 98 
XP_006627641  67 lvfhngytdPLCWTgmgtGQLTAlhFS----AQEIRARISQSRGP-----------------EPVTLAVDSLSwVLr--- 122
XP_003955591  65 ---------PEYAS----NFIDAenMD----LAKIGQLVKSYL-PSSSEtr----------rsKNLVIVDSLN------- 109
XP_056088281  66 ---------PSYCT----QFIDAaqMD----FVHVVRQITSYL-PAATAtq---------akKH-MVIIDSLN------- 110
XP_003669258  65 ---------PSYAT----HFIDIneVS--GgLPKLIETLQSYL-PSPQQkh---------snKR-LVIIDSLN------- 111
XP_003677064  65 ---------PDYAS----HFIEVtnTSS---LTKTMEIIQSHL-PSPSSttt-------hnnKKILLIIDSLN------- 113
CCG82820      68 ---------PAARD----TLPQV------KdLDGILQEIGLLAGQAS---------------SKVLMVIPDLNdFL---- 109
XP_013025642  57 --------cPSEIN----QFIYAtsWNKmKsLKELYDEIVQWWKPE----------------DQHLIVIDAINpIL---- 104
O94495        57 --------aPEGID----CFLYAtsWEKvKsLKELYEHISSWRTQG----------------KQHIVMIDTINpIL---- 104 Schizosaccharom...
EPE02265     139 plF-----VAAFVSSLV-SP--TTSVVGLYRTDNyassiqlplspelQGKPHPYKVLTHLATAVLRVN----------PL 200
XP_004999001  99 -aFageraALKFVQRLLqRK--GCSVYMCLHSNT--------------VSAFCARELEHLCRTHVRIQahsaalshagTA 161
XP_006627641 123 --HnptasVCQSLQELRrDGl-LKRILVLLHSDL--------------HQHGMVDSVCHLASTVVTVA----------PF 175
XP_003955591 110 --CisrshLTQFVSSIAs-P--HATIVATYHKDVpevde-----hgleNYPSAVELLKFISTTIMNINp---------IL 170
XP_056088281 111 --YiptdlITRFLSEIAs-P--HCTIIATYHKDItdddhav-ipggnnNYPDKLTLLQFMATTILDIEv---------AL 175
XP_003669258 112 --YipndkLAQFISAVAs-P--HCTLVGVYHKDTpevdi-----paldNYPSSLELLQFMATTILNITp---------AL 172
XP_003677064 114 --YipndkLAQFVSSIAs-P--NATLVATYHKDFpeven-----paldNYPSSLELIQFMATSVINIYp---------KL 174
CCG82820     110 --AqnaahLSTFLSSLIqISpdTVSVCAIHHRDVpvp-------gyaSHLPSPETLLQYLATTIIDVD----------SL 170
XP_013025642 105 --NnsvssFSMFFGSILaLG--STAFLTAYHKDVsle-------nypSYLPACETFLDYTSTCTVSFT----------GM 163
O94495       105 --NtsissFTMFFGSVLaLG--SICFLTSFHKDVtle-------nypSYLPPCEVFLDFTSTCTVSLI----------GM 163 Schizosaccharom...
EPE02265     201 DEE--VARKRARDRAEELPQFGWAEG-EG-FPFAynnwrysktdlmataatpgtgafasdidrrgILVDMELRRRSGRAV 276
XP_004999001 162 PH---VGRQLQQQHVVVADTIHMRTGgSKpTTSR-------------------------------ALVTINTLRNGQRAV 207
XP_006627641 176 SGLggVVGETAPQ----------------------------------------------------GIAMTTQRIKSGKVL 203
XP_003955591 171 PRS--LDRE-ELNISLNRFRMP--RGlNN-PTFK---------------------------------LEFTNRRRSGRAL 211
XP_056088281 176 AGN--LDTE-EVGELLNEFRIP--RGlNN-EIYQ---------------------------------LRFVNKRKSGRSL 216
XP_003669258 173 PSR--IDEE-SLKYELEKYSIP--RGlNN-PIFN---------------------------------LKLINRRRSGRSL 213
XP_003677064 175 SKS--LDDE-TLKYELDKFNIP--RGlNN-QTFN---------------------------------VNLINRRKSGRSI 215
CCG82820     171 EHV--LLQRDAERRSRTSRVTLDLEGrDIfVPVGsnc--------------------------drLYLDLEHRRKSGRGN 222
XP_013025642 164 QHL--MVEHDARMRSQPNPLTEELQDcSIvNLLGsnc-------------------------engIVCYVDFRKKSGRVI 216
O94495       164 QHL--SVEHDAKMRSLPNPLLEELQDdKIiSLLGsnc-------------------------etaIVLHVEFRKKSGRII 216 Schizosaccharom...
EPE02265     277 VER------YVMVLGGAGGAGAkkepsssagtrgkmpwqkgatpctdITVMSDHPLFavpdlsegfkrpgd------gng 344
XP_004999001 208 SVQpltaapTLLDALEHTPAPItatatspast--------attttatteAVSTRGQGatasvsmpsttrtataaappqpq 279
XP_006627641 204 QEE------ECFTVGQDLSVQVygrpsqpglt------------------------------------------------ 229
XP_003955591 212 SYE------FNVDTVNHNYSIVmeagted------------gvvetpEML---QDLA----------------------- 247
XP_056088281 217 EYD------FTIDSKNHEYELSlstrqeead--------ggneletpDML---QGLT----------------------- 256
XP_003669258 214 SYD------FQIDTNKHLYEHVinnpeeq-----------eneietpEML---QGLT----------------------- 250
XP_003677064 216 TYS------FQIDSTKHTYDLIksalqqde---------eqqvnetpEML---QDLT----------------------- 254
CCG82820     223 TES------SVFDVRTGRILATgevdgleh----------rlerpaeVGIPEEHEL------------------------ 262
XP_013025642 217 KET------CTLKNGALEVFTPfvgaqkeael------------------------------------------------ 242
O94495       217 KES------CVLKNGKLEPYTPfeetargpep------------------------------------------------ 242 Schizosaccharom...
EPE02265     345 ndddsdedlptS-----TFNLGLTDKQRRDREGIVLPYF------------DAQTDIGa---G---EGGRILYD 395
XP_004999001 280 qvsagggggddDpltnlTFSLKLTEEEKAMRARTALPYAkt--------reEKQRALA--------GTGAIYYE 337
XP_006627641 230 --epepedsqaDpaanlTFNLRLSEHERQAKDNLALPFA------------FSQEKKSallrPr-aGGGQILYE 288
XP_003955591 248 -----------------TFNLSTSAKQKEAKDQVALPFL------------EAQ-SF-----S---AGGAIVYE 283
XP_056088281 257 -----------------TFNLGTSNKQKLAKDQVALPFL------------EAQ-SF-----G---QGGAIVYE 292
XP_003669258 251 -----------------TFNLSTSTKQKMAKDQVALPFL------------EAQ-GLE----S---HGGAIVYE 287
XP_003677064 255 -----------------TFNLSTSAKQKKAKDQVSLPFL------------EAQ-SLS----S---HASAIVYE 291
CCG82820     263 -----------------GFKIGLSEKQQRDRDGVMLPHYvqiengrggvveETKQDVAgtaaA---GGGNIYYE 316
XP_013025642 243 ---------eapadldvpFNLTLSEKERNEREEVFLPHF------------GAQ-DIRksaePgfvDGGAIIYH 294
O94495       243 --------adnqidfnvSFNLNVSEKERKERDKVFLPYF------------SAQ-MVGsqhkSsfvDEGTIIYH 295 Schizosaccharomyces p...
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