Conserved Protein Domain Family
CtIP_N

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pfam10482: CtIP_N (This model is not part of the current CDD release)
Tumour-suppressor protein CtIP N-terminal domain
CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control. This N-terminal domain carries a coiled-coil region and is essential for homodimerization of the protein. The C-terminal domain is family pfam08573.
Statistics
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PSSM-Id: 519403
Aligned: 17 rows
Threshold Bit Score: 122.482
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ELK04390       4 FMESLNRLRDIHEREVLSLQNKLLELNSERCREARRVEELCAKNQQLREQQKALKENVRVLENRLRAGLCDRCSVTQELA 83  
F1R983        20 LQELLTAVRDLHDTALQELQAKIAKLKKERCLDAQKLSEFHSKNQHLREQQKIQQEKIRQLEDRLRSGPCDRCTVKEKQI 99   zebrafish
XP_023182427  18 FEDVWRQLKVCHQNTVQEYQSKVSKLKNDRCLDAQKLEVFYNRNQQLKEQNKSLQDSISLLEDRLRVAECNRCAVLEEKL 97  
2_pfamImport   1 FDKLWGQLRETHREALQDAEDKVSKLKTARYLDAESLEAFHFRTQQLKEENKTLQETVSRLEERLGTGECDRCAVLEENL 80  
4_pfamImport   1 FEDVWKRLRELHQDALQDLEAKVSKLKKERCLDAQKLELFYKRSQQLKEQNKALQDTISLLEARLRSGDCDACAILKEAL 80  
XP_015220508   6 FDDVLNKLRDLHDKEIRAWQEKVTELNKEKCCDAQRMDELFTKNQQLREQQKILNENVKLLENRLRAGLCDRCTVTQDVA 85  
XP_004070638   4 FGDTLRKLQEAHDREVEVWQVKFRELSNKKGCDTKRMEELFSRNQQMKEQQRLLTENIRTLENRLRAGLCDRCSVTQDVA 83  
XP_040050266   4 FNSLLLKLQEVHEREVEGWQGKIQELSNKKGCDTKRMEDLFSKNQQMKEQQRVLTENIKTLENRLRAGLCDRCTVTQEVA 83  
XP_007250840   6 FTELLHKLKEVHEQEVEGWQEKVLELTNMKTCDAKRLEELYSRNQQLREQQKILTDNIKQLENMLRAGLCDRCTVSQDMA 85  
XP_005174176   6 FPELLQKLREVHDNELEGWQEKVLELTNKKNIDTKRLEELHSRNQQLREQQRILTENIKQLENRLRAGLCDRCTVTQEMA 85  
ELK04390      84 RKKQQEFESSLVQSLQHVFVLTvtfaaNEMTRLQEENETLKQEVT 128 
F1R983       100 KKTNTELEDNNQRNLSVISELE-----AERKTLTDENRRLSLELE 139  zebrafish
XP_023182427  98 KSSQD-------QNLNVITKLK-----NENKNLEDENRNLQAELQ 130 
2_pfamImport  81 RNNQD-------QNVRLVAKLK-----NERERLEDENRKLHAELQ 113 
4_pfamImport  81 ETNQD-------QNQRLVTKLT-----NEKKILEDENRKLQAELQ 113 
XP_015220508  86 KKKQHEYETSQMQSLQHISILV-----NEMTMLKKENKRLLEEVK 125 
XP_004070638  84 KRRQQEFEASQIQSLQHISILA-----GEMTNLKKEILKLKDENR 123 
XP_040050266  84 KRRQQEFESSQIQSIQHITLLA-----GEMNNLKRENKQLIEELR 123 
XP_007250840  86 KKQQQDFESAQLQSLQHITLLM-----GEISALMKDNEKLKEEVK 125 
XP_005174176  86 KKRQQDFENSQIQSLQHISLLV-----SEMNTLKKENDRLRDELK 125 
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