Conserved Protein Domain Family
Urb2

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pfam10441: Urb2 (This model is not part of the current CDD release)
Urb2/Npa2 family
This family includes the Urb2 protein from yeast that are involved in ribosome biogenesis.
Statistics
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PSSM-Id: 519383
Aligned: 103 rows
Threshold Bit Score: 77.3051
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_009154067  1260 CLCLDNARTVLEsHPLIINQATLDNLLANicTIASS-----AAddyivtpttgnsevakvsphpsDIYNRLCAVVGAILA 1334
XP_003038469   218 VEVLRFVASYCTdRPAALRQSDLPLIFALlsNYLRPirpirsq----------------apttstAVFHAITTITGALIR 281 
ESK98440      1123 LDTLRFLAQRCReRPAALRLVDVSGIWLFltKTLRGceehd-------------------retnvELFSNISSIATSLIR 1183
17_pfamImport    1 SEVLGLLAGYCSdRPAYVRPSDMSAIWSIlgQLLASssehd-------------------ettdpTVFQEIVNVVSALVR 61  
XP_007390321   758 TEALRFIARQFNdRPALVRQLDLSSVWSIlgQSLEGsvehg-------------------rstnkPVFHEVISIVSALIR 818 
XP_001732301   463 RSIVDWLSCVCQhRARVLRPFDVPRILALvgTLLGPcasttRTdact---------------dapWIFRGICAALRSIVR 527 
11_pfamImport    1 VASVSALDLLCRhHAMLLRTQDVHAMMQLfaTLVGPsardeASstisllpa------srrdavrsAIFSGIVSTLGSLMR 74  
XP_016290211   247 VSAVCALDDLCGnHAMLLRTQDMGALLQLfaTLTGPsmadePAralvhler------selevvraKIFGGMVSTLGTLLR 320 
XP_011389347  1350 VACISALDLVCShHAMLLRTQDLGAVLQLfsTVTGPsmcdePLasvvetkr------eeldgmrsKLFGGIVSTLSSLMR 1423
XP_012191099  1418 VAAISALDLLCShHAMLLRTQDLGAVLQLfaTVTGPslcdePLqsvvemqr------eeldamraKLFNGIVSTLSSLMR 1491
XP_009154067  1335 RHRRRISDRYHLLLPVLQTLLRCLFWpglnalhdnhnpntnsstavsvsvsafgtrhlpnwmrtsqdPL---SPSSAEHF 1411
XP_003038469   282 LRRDLLSATLPHLSLVLRQLLFALRRprpqlgrrqlda------------------laktfpswidpRNp-lGAEEAAAL 342 
ESK98440      1184 LRRDLVLPTLPHMGAVLQLLIMSMRSprpnlgakqtgi------------------vsdslpmwinvRQp-lGPEEAKLV 1244
17_pfamImport   62 LRRDLVVNNLPHLGMILRRLTSALRAprpqlgakqtrl------------------vmntlpawinaEKs-mASDEAKAL 122 
XP_007390321   819 LRRDLVISTLPHLAFVLRRLHMSLRHvrpqlgakqskm------------------vtdtlprwvntHDp-lSSEEARAL 879 
XP_001732301   528 QRKDLVTPCLPHLTDILSQQLRLLSHmlrahpglailrr----------------ihastpcwidivEHp-lGVTEAQAF 590 
11_pfamImport   75 LRQDLVLGGLPQLGALLARLCALFRRlkrtpsgmqrrql----------------rrdlpawldpveVPp-lGEHEARAL 137 
XP_016290211   321 LRQDLMSGFLPQLSLLLARLVTLFRQlrngggasgsqrrt--------------lrrdlptwldpvlVPp-lGVGEARGL 385 
XP_011389347  1424 LRQDLVVGFLPQVGLLLARLITLFRRlgrhasngeiqasgsq---------rrslrrdlpawldpvlVTplrAHHEARAL 1494
XP_012191099  1492 SRQDLVVGFLPQLGLLLSRLITLFRRlrrnaagkieasgsqr----------rslrrdlpvwldpvlVSpltADSEARAL 1561
XP_009154067  1412 SRLLSSICNPtvsaarsgsskkrghshghndlnlnlndetkraRLLAGQHMQYLVMEYARCTLDg--lIVSSVKEKLMPG 1489
XP_003038469   343 ARVLEALTTKtiprthksggaas--------agdasaakatslAPVFSRHAAPVLAAYADAANDplciTPAEVRKALQPG 414 
ESK98440      1245 ARLLESLTTKtvikvhgya---------------venqkaeslAKPFSKHAAYVVKAYIEAVNDslcvLPLAVKKALQPG 1309
17_pfamImport  123 ARLMTTLTTKtvvrihgqn---------------geaqkpeslARPFSKHAAYVLTAYIEAVSDplchIATQVRKELQPG 187 
XP_007390321   880 ARLLTTMTTKtvvrgqqht---------------adgakaeslARPFAKHAAYVLQAHIEALNDplcvVPGDVRRELEPG 944 
XP_001732301   591 RRLLTELEGKtsvaslgvkra-----------rtetrsiteslAKPMSKYAVYIMVAYVRCVTMpdttITAALRQELQPG 659 
11_pfamImport  138 SRLLSSLVAKnvslktrg-----------------degkaqslAKPFSKHATYVLVAYLRSLTApnavVPFEVRAELEVG 200 
XP_016290211   386 ARLLSGLVVKsvplagg--------------------gkaeslAKPFGKHATGVLVAYLRCLTVqgavVDAEVRKELEVG 445 
XP_011389347  1495 SRLVSNVMAKsvslkhrssda------------pgtavkaeslARPLSKHATYMLVAYLKSLTAqgsvVPADVRAELEVG 1562
XP_012191099  1562 SRLLSNLVAKnvslkhrasd--------------sttvkaeslARAFSKHATYVLVAYLKSLTAqnsvVPVDVRTELEVG 1627
XP_009154067  1490 KYSVMGAMeRDL-LRALNAALDPSGRAIFKGLYDDWTRyGKWDKS 1533
XP_003038469   415 LFALCGMLnEHTrDAMMVASLDAAGKVTMKSLWREFER-QRYVGK 458 
ESK98440      1310 LYSLCSMInEYNrDALMVALQDSGDKSVFKDLWKEYEK-QKYVGK 1353
17_pfamImport  188 LFALCDMLgEYNrDAMMVSALDANGKVMMKALWKEYER-QKYVGR 231 
XP_007390321   945 LFALCDMMgEYSrDALMVSALDAGGKAVLKNIWREYEK-QKYVGK 988 
XP_001732301   660 MFALCNMCgDFErDAALKSMLDAAGQLVFKSIWTQWDA-QRYKGA 703 
11_pfamImport  201 MLTLCGIMgHHQrDAAMVGMLDAAGKVLMKRIWSEYEK-QRYKGQ 244 
XP_016290211   446 MMTVCEVMgVRQrDAAMVGLLDSAGKVLMKRVWGVFEK-QRYKGQ 489 
XP_011389347  1563 MMTICEIMgHHQrDAAMSGLLDSAGKVLMKRIWSEFEK-QRYKGQ 1606
XP_012191099  1628 MMTICAIMgTHQrDAAMVGSLDSAGKVLLKRIWGVFEG-QRYKGQ 1671
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