3OGR


Conserved Protein Domain Family
BetaGal_dom2

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pfam10435: BetaGal_dom2 (This model is not part of the current CDD release)
Beta-galactosidase, domain 2
This is the second domain of the five-domain beta-galactosidase enzyme that altogether catalyzes the hydrolyzis of beta(1-3) and beta(1-4) galactosyl bonds in oligosaccharides as well as the inverse reaction of enzymatic condensation and trans-glycosylation. This domain is made up of 16 antiparallel beta-strands and an alpha-helix at its C terminus. The fold of this domain appears to be unique. In addition, the last seven strands of the domain form a subdomain with an immunoglobulin-like (I-type Ig) fold in which the first strand is divided between the two beta-sheets. In penicillin spp this strand is interrupted by a 12-residue insertion which forms an additional edge-strand to the second beta-sheet of the sub-domain. The remainder of the second domain forms a series of beta-hairpins at its N terminus, four strands of which are contiguous with part of the Ig-like sub-domain, forming in total a seven-stranded antiparallel beta-sheet. This domain is associated with family Glyco_hydro_35, pfam01301, which is N-terminal to it, but itself has no metazoan members.
Statistics
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PSSM-Id: 519378
Aligned: 119 rows
Threshold Bit Score: 134.613
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3OGR_A                  379 TPENATQG-VYS-DSQNIVITPLLAKES-GDFFVVRHANYSSTDTASYTVKLPTSa-GD-LTIPQlggsLTLTGRDSKIH 453  Tri...
Q5NP32                  414 DITKMMPGsVIVpTSSHIRVLHNVNPDTnSHLFFITHKPANSLHDSKFTFSVALPd-GT-YTLPEeg-nLELNGHDSKYL 490  Zym...
PRJNA213647:NX02_22720  403 dlAGMVPAgSVQiSSPNIQVYHNKSPETdARFLMVTHKPSNGQTNDSFTITADLPd-GR-YTLPQag-pMQLNGFDAKWL 479 
WP_015622178            371 pltrTDAAtGPAsSNPLLRTAARVNPDAgTQFVLLRHTDRAALSDDAGTLDWSTPd-GR-YTVP-----VRLLGRDAKLL 443  Act...
XP_003031998            428 gngtTTNGtAYS-DSPDIFTTHLNSPETnANFYFVRQVTNAKTNDTDFTLRVNTTleGE-ITIPKng-tSTLAGRESKIL 504 
XP_007398136            508 gngtIGFGtAFS-DNPRIYTTALSSP-SgAHFYIVRSNSVTHTNMTKFTLRVNTTe-GP-LTIPQfgpqATLDARESQIL 583 
CCA67250                454 gagsQTTGaSFS-DSSNVYTTVWRDPQSgTSFYTVRQTTNTKLTTTEFNLHINSTalGNdFIVPTsg-vMTLEGRESKVL 531 
CCA67251                441 gdgsQATGtPFS-DSNEIYTTLWKDSKSgTGFYIVRQTTNTKLTPTLFTLRVNSTvlGTdIVMPSsg-vMSLDGRESKIL 518 
XP_003030581            455 aafyVANGtSYT-TNSAVYTTELRNDDTnAAFYFLRQSDSTSQGTETTQLNVKTSk-GA-VTIPTeg-dITLAGRDSKII 530 
EGN96972                430 ssTLIANGtNFT-SSSSVHTAELRNLDSgAAFYIIRQNDTIPTTLTTTKLNVTTSs-GS-LTIPVqg-nLVLDGHESKVL 505 
3OGR_A                  454 VTDYPVG-K-FTLLYSTAEIFTWNEFAEKTVLVLYGGAQELHEFAVKnpfG------SSKTAKAKKIEg--S--NVTiHT 521  Tri...
Q5NP32                  491 IAGFNLG-R-NRLVYSTSQFQTMITQGEHDIALFNGRQGEAGEIVLR---Y-------ETKPRVTVIEg-------D-AR 550  Zym...
PRJNA213647:NX02_22720  480 VAGVKLG-G-QKLVYSTSELQALLKVDGSDVALIYGRAGEQGETVLR---Y-------AGAPKVTVVEg-------N-VT 539 
WP_015622178            444 VAGWDMG-G-QRLVYSTSEVLTHEAIGGRDIAVLYGTDGTAGQTVLR---Y-------ASRPRVTVLDg----------A 501  Act...
XP_003031998            505 VTNYPFG-V-SKVEYSTAEVLTWLTLDDTDILVTYALPGQYVEIAVE---Tnst-dtVNVAGSDSISA-----------S 567 
XP_007398136            584 VSEYSFN-S-HTLKYSTAEVFAWATIDSTDHLILYANEGHQVEAVIS---Gvps-dkPKVTGSSSISA-----------R 646 
CCA67250                532 VADYKFG-N-SKLLFATTEILTWQTFDGTDYIYLYTSPSQSIEVIVQ---P---------NGSATPNDytpSgfTVK-SG 596 
CCA67251                519 VADYKFG-N-SKLLFSTAEVLTWQTFDGVDYIYLYTSPSDNFEIIVQ---A---------SGLASSNSttpPgfTIN-ST 583 
XP_003030581            531 VVDYVFGqSeTTVLYSTAEVLTWTTIDSTDYIVLYAGKGQTGQTALL---FneepdvSTEDGSSVESSf--S-------- 597 
EGN96972                506 AIDYVFGiSgTRILYSTTEIMTWTTIDNTDYIILYSMSGQTGETAFR---F-------ASEPDVNIINtsdThiSTS-YT 574 
3OGR_A                  522 t---SNlt-vVLQ-WTASSarQVVQL-GS----LVIYMVDRNSAYN 557  Trichoderma reesei
Q5NP32                  551 yfydPArhdlRLN-YIHGGl-TRIKIeNGgpapLILLIGDEKESAR 594  Zymomonas mobilis
PRJNA213647:NX02_22720  540 safdASkgdlRLN-YAHQGr-AIVTIeGAdrpkLTLLIGDEAEGAR 583 
WP_015622178            502 arasWSghdlRLD-YTHRGl-TRVLVqGGgrtpLLLLLGTDATAAA 545  Actinoplanes sp. N902-109
XP_003031998            568 pa-nGTvl-iSGS----PSgvSVISF-GN----TTVLVVDKYTARG 602 
XP_007398136            647 tgpiGTfi-iTGS----PKgvSSISL-GN----TMVFVADKHTALS 682 
CCA67250                597 kny-----tvISApAKRTTsvSAVKL-GK----TVILISDKANAla 632 
CCA67251                584 eky-----tvVSAqANRASavTAIPV-GN----AVIILADKASALa 619 
XP_003030581            598 -----Dgv-lTID-YT-LDgfEAVSI-NNg---SLVLLLADKgian 631 
EGN96972                575 dgtlTLnynlVAS-----MpvAVVGI-GEd---VKLLIMDKASAAQ 611 
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