4BJJ


Conserved Protein Domain Family
TFIIIC_sub6

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pfam10419: TFIIIC_sub6 
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TFIIIC subunit
This is a family of proteins subunits of TFIIIC. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. Yeast members of this family are fused to phosphoglycerate mutase domain.
Statistics
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PSSM-Id: 402169
View PSSM: pfam10419
Aligned: 90 rows
Threshold Bit Score: 54.9243
Threshold Setting Gi: 115532258
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4BJJ_B        12 DDVE--NIVFQFQNSSLDFQS--------------------------------------------------------SDD 33  fission yeast
EGF81859       7 IVEEtaYVVLDLGQEVNAETLrke--------------------------------------------------vleHNG 36  Batrachochytriu...
EIE90317       9 EEETn-YVLFDIGASVTSQYIeqi--------------------------------------------------aqtQGG 37  Rhizopus delema...
EPB86723       9 EEESs-YVTFDMGKTVTSNFVeq----------------------------------------------------kaRAG 35  Mucor circinell...
6_pfamImport   1 EEEE--YVLLELDGCLYSNIQp-------------------------------------------------------DAP 23 
XP_002889275   1 MEDE--YVMIDLDDVLRHIDIp------------------------------------------------------sDAP 24  Arabidopsis lyr...
CBI20330      21 EEEE--YVLLNLDEVRGQVDIp------------------------------------------------------pNAP 44  wine grape
XP_018676353  98 GEEE--YVLLDLDDVCVRADIp------------------------------------------------------aNAP 121 wild Malaysian ...
XP_012192694 145 SDTEe-LITLDLGAERIAKRAllgysggldyidptpsaaaassstrsvrstrgttntsaetstntaqastnsthlgaGKH 223 Pseudozyma hube...
XP_016289997  48 TDDEe-LVTLDLGTERIAKRAllgysagldfvsephaatatssartv-----rgsraggdakatetskpsstthlgaGKQ 121 Kalmanozyma bra...
4BJJ_B        34 FSILGIDQPHPIVRIGGMF-FRGTWHQPIGTDIVVPSVNDSel----------------------------srDGLVLCK 84  fission yeast
EGF81859      37 ISLIGMDSPKPVLRIGNWV-FQGEPDIVIGTDLLFKVAAAPqselvsssdqspqss--tdqwkretptkapkiHHIGEVR 113 Batrachochytriu...
EIE90317      38 CRIIGLEEGKPYLQVGHQI-FEGEMDDTIGTNLLFEIQESKretagllpllssm-------kndgskqpkyttNYFCKSE 109 Rhizopus delema...
EPB86723      36 CRIVGMEEGQPLLQLGGLT-FEGTVDETVGTHLLFEIKEKVhdtkgllplltsmr-----tdddapkqqkysvEYFCSTE 109 Mucor circinell...
6_pfamImport  24 YILSGLDTLAPNLIVGDGVkMIGEYEETVGTYYLFSEsdaspkpvhdhsappkv--nkdklgstnkegpskevKHLARVQ 101
XP_002889275  25 YTLSGLDTLNPVLTIDDKIkLVGEYIETIGTCLAFSDkcenq---------------------------tpqkKTVAKLH 77  Arabidopsis lyr...
CBI20330      45 YVLSGLDTPNPILVIGDSLkLIGEYEETIGTCLVFSEgqatpvvheetgpseanl-fsgtfiidpnqapakevKPIASLQ 123 wine grape
XP_018676353 122 YVLSGLDTVKPVLVIGD-LkLIGEYQETMGTCYIFSEgdgaptvtcsetkpsetnvfkdkqfldpkqapskqvKPIASLH 200 wild Malaysian ...
XP_012192694 224 LSMTGLDTSTPLMKINDTV-LRGSLMQMFGTEIVLKDDFDPtrdrgkqhrlq-----------pippadgranVSSSTTR 291 Pseudozyma hube...
XP_016289997 122 MAITGLDSAQPLLKINDTV-LRGRRMDLFGSEIVLTDEFDPtrprskqhqlqp---------vppstrdgradARSTSTR 191 Kalmanozyma bra...
4BJJ_B        85 RRLMLEQIRLV 95  fission yeast
EGF81859     114 RIVKFNRVELK 124 Batrachochytrium dendrobatidis JAM81
EIE90317     110 KIVTCTSVTLR 120 Rhizopus delemar RA 99-880
EPB86723     110 NTVKMDTVTIR 120 Mucor circinelloides f. circinelloides 1006PhL
6_pfamImport 102 KIVKFRSINED 112
XP_002889275  78 KILKFRLAPLD 88  Arabidopsis lyrata subsp. lyrata
CBI20330     124 KILRFRLLHEG 134 wine grape
XP_018676353 201 KILKFKLVSED 211 wild Malaysian banana
XP_012192694 292 KRILFRPLYDP 302 Pseudozyma hubeiensis SY62
XP_016289997 192 KRILFRPIYDP 202 Kalmanozyma brasiliensis GHG001
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