1XZP,3GEE


Conserved Protein Domain Family
TrmE_N

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pfam10396: TrmE_N (This model is not part of the current CDD release)
GTP-binding protein TrmE N-terminus
This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyzes GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein.
Statistics
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PSSM-Id: 519351
Aligned: 732 rows
Threshold Bit Score: 61.6068
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1XZP_B              35 TIVAVATPPGKGAIAILRLSG-----------------PDSWkivQKHlRtrskiVPRK--------AIHgwiheNg--- 86  Thermotog...
jgi:SpiGrapes_1182  26 IIYALATAWAQSALAVIRVSG-----------------EGCRkalGECfS-----RPKAllqaknatLVHgfitdGq--- 80 
WP_013969511        11 PIAAHATPLAESALAVIRTAG-----------------PGCIdllANLfS-----RPKAllsapgntIVHgwiqnS---- 64  Graciline...
WP_015708990        13 PMAALATLLGESALAIIRTSG-----------------KNSLellAEVfS-----RPEKllaapgnsVVHgwiigK---- 66  Treponema...
WP_015710609        11 PIAAIATPLGESALALIRTSGgsfagstggncntanndSNSVnllAKIfS-----KPKRlkeaagntIIHgwilgS---- 81  Leadbette...
WP_013757421        11 PIAAVATAIAPAALGIIRTSG-----------------KGCIelvAALfS-----RPEAlrnaagntLVYgwivdPag-g 67  Treponema...
WP_013700457         9 PIAAIATALVPSAIGIVRTSG-----------------KNCIelvSKIfS-----RKKAllqaagnsLVYgwiedSriqn 66  Treponema...
Q73KN7              11 PIAAIATALSPAALGIVRTSG-----------------EGAIdlaSAIfS-----KPKKlkeaqgnsILHgwvldPe--- 65  Treponema...
44_pfamImport        1 AIAAIATALSPAALGIVRTSG-----------------ANCIelsASIfS-----KPGTllkaagnsVLHgwvinPk--- 55 
P53364              10 DIVALATPFLSSALCVIRSSG-----------------ASSIskfSKIfS-----NHSAlnsasgntIHYgyildSe--- 64  Borreliel...
1XZP_B              87 EDVD--EVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFlKSGARMAEPGEFTKRAFLNGK 149 Thermotoga maritima
jgi:SpiGrapes_1182  81 NGENldEVVAAVYTHGHGYTLEESVEFTCHGSLPGLQKLLALFkRIGLRPAQGGEFTFRAFLHGR 145
WP_013969511        65 QGEKidEVLLSVFRSPRSYTGEDAVDISCHGGIAIARSILQSLfDGGFRQALPGEFTFRAFMNGK 129 Gracilinema caldarium
WP_015708990        67 DRSKidDVLISIYRAPVTYTGEDSADISCHGGIAAAKAVLETLySAGFRPSLHGEFTFRAFMNGK 131 Treponema primitia
WP_015710609        82 QGEKidEVLVSVYRAPKSYTGEDSADISCHGGIAVVKAIMAALkQAGFREALPGEFTFRAFMNGK 146 Leadbettera azotonutricia
WP_013757421        68 GVRRidEVLISVFRAPKSFTGEDMAEICCHGGPAIVTGIYRLLtENGFRAAQHGEFTFRAFINGK 132 Treponema brennaborense
WP_013700457        67 GNKKidEVMLGVYKAPKSFTGEDMVEIFCHGGVNVVTSIFSLLlENGFRKAERGEFTFRAYINGK 131 Treponema succinifaciens
Q73KN7              66 SKKEvdEVTVCVYREPKSFTGEDSVEFICHGGTAVVLKIYRLLiENGFRAAEGGEFTFRAFANGK 130 Treponema denticola ATCC...
44_pfamImport       56 TKIKidEVTVCVYRAPKSFTGEDSVEFICHGGTAVVLSIYRLLlQNGFRAAEGGEFTFRAFANGK 120
P53364              65 NGCKvdEVVVCLYRAPKSFTGQDAIEVMAHGSVIGIKKIIDLFlKSGFRMAEPGEFTLRAFLAKK 129 Borreliella burgdorferi B31
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