Conserved Protein Domain Family
DNA_pol_lambd_f

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pfam10391: DNA_pol_lambd_f (This model is not part of the current CDD release)
Fingers domain of DNA polymerase lambda
DNA polymerases catalyze the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. DNA_pol_lambd_f is the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone.
Statistics
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PSSM-Id: 519347
Aligned: 171 rows
Threshold Bit Score: 53.9816
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CBN80507      286 QQLMKVHGVGSRTAKDWYNR-GIRSVEDARRtllpndddtEgdeKRPNLKpeVV--MGLKHFHDMQ 348 
XP_002556450  263 EYFMNCYGVGSHTARKWADG-GARTFKDALK---------L---FPSDFS--WSilFGWKYYDDWT 313 
XP_001647019  299 QYFSTCHGVGSETAKRWNSL-KLDSFKDVLE---------K---FPNEFAveWPilFGWSYYEDWQ 351 
XP_003980159  272 DYFSNCHGVGAYTAKRWHLF-KLNSLTDVVK---------K---FPDELTkdWPilLGWSYYEDWS 324 
XP_003644393  239 EYFVQCHEVGPTTASQWQAL-HYKSFKDVLT-------------HTKQWNlhWSilYGMRFFEEWQ 290 
Q757Q1        219 RYFAACHDVGPGRAQQWRAL-GFESFADVLR-------------ASPQWRlpWAmlYGMRFYEDWQ 270  Eremothecium gossypii
Q6CX59        229 LYFQECHGIGAFKSKQYVNM-GYSTFEDLIP------------------YmnWTqlTGLAFYEDWQ 275  Kluyveromyces lactis
Q7T6Y4        104 QELENVIGIGSSTAKKLISQyGIRSVDDLKK---------Ai--ETGKVKvsTSimLGLKYYGIVQ 158  Acanthamoeba polyphaga mimi...
XP_020438391  379 EQLSKIHGTGPETVKRWLAK-GINSIQKLQVi-------aNn--DPSFLTnqQQ--IGLKYYNDFQ 432 
XP_004355704  788 QALLKIHGAGPNTVKNWMAA-GVVSIQQLRQh-------iLi--DPLFLTsqQH--IGLKYYEDFL 841 
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