Conserved Protein Domain Family
RTP1_C1

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pfam10363: RTP1_C1 (This model is not part of the current CDD release)
Required for nuclear transport of RNA pol II C-terminus 1
This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localisation of RNA polymerase II. This family is found in association with pfam10304.
Statistics
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PSSM-Id: 519331
Aligned: 112 rows
Threshold Bit Score: 75.2011
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002294293 1042 LSIAEHDLQSSQPPFRAKGVVSLRHIARSL--VdagattpsdeviiteihsstpdrsttkvdVALVARSLARICLIALSD 1119
Q22528        882 CNEWIEELHDDEPAIKGGALMQIARVFRNRtyHc----------------------------QRLFEYGVFDAVKDMVAD 933  Caenorhabditi...
EFP09560      703 CNEWIDELHDDEPAVKGGALILIAKAFRAKswHc----------------------------QKLLDYAAFDTVKDMVSD 754 
EGT33757      701 CTEWIDELHEDEPAVKGGALMQISKAFRNKtwHc----------------------------QKLLDYGAFETVKEMLAE 752 
XP_002424701  759 FNKIYEDIRSVDVPTRGHAILELNKLIKNRnpH-----------------------------VLSKKEYIFSVLKCNLKH 809 
XP_020429690  815 LKEILEDLSHPLLPIRAHGLIELRKLVLQSkqSe---------------------------lIHKNLENIIEIFKTQIND 867 
XP_004350788  828 LKEILDDLSHPLLPVRAHGLIELRRLVLSMrsNknn-----------------------dniVKRNLDNIITIFKTQLND 884 
Q54Y12        206 LKEILNDLSHPLLPIRAHALIELRRLVLSKsgL-----------------------------IEQNLKNVLEIFKTQVND 256  Dictyostelium...
XP_004994939  977 LQRIFTDIKDPLMPVRAHALVQLRKLINAKreQ-----------------------------VKENLNQILGMLSPCLGD 1027
XP_002108957  498 FKSIMAELEDPLIPIRGAGLVHLAKLITKKdpE-----------------------------VTENITQIETIIRTNLED 548 
XP_002294293 1120 SESYVYLASIQTLVAIGDVC-PSEIIPLIGILVakgtaefqvskpdvgvssVVLSLSSEQRI-----KAAEALIFMIRRR 1193
Q22528        934 DDSYVYLSAINCLCEMGLY--NKNMFEDTIEYYe----------------eMSNQPQKDTKM-----II--RVGRVAEAI 988  Caenorhabditi...
EFP09560      755 TDSYVYLSAINCLCEMALF--DRHVFDGFIEYYe----------------eIASIPNKDERLiirvgRTSEALGKLLIAR 816 
EGT33757      753 EDSYVYLSAINCLCEMSTY--NYEISDSVIEYYe----------------eLSEREPKDEQLtirigRLAEAIGKLMLAR 814 
XP_002424701  810 EDTYIYLSAINALETLGYVQkPGEIFEILCEEYt-----------------VYKKDSSEVQL-----KIGEVLMRLTRGL 867 
XP_020429690  868 DDTFIYSCAINGLTALGDIY-PVKIIPILTAQF------------------NNQSYKEERRM-----KIGESLVQISQRC 923 
XP_004350788  885 DDTFIYTCSINGLSSIGDIY-PNDIIPILIDQFk-----------------ETNKNKEEKRM-----KIGESLVQISQRC 941 
Q54Y12        257 DDTFIYGCSINGLSALGDIY-PNRILPILIESF------------------LNKSFQESKRM-----KLGEALIQISQRC 312  Dictyostelium...
XP_004994939 1028 PDSYLYLAAIDALAALGAAF-PAAVLPKIMAEF------------------RDGSLAIELRL-----KIGQSLMQVVRAL 1083
XP_002108957  549 SDSYVYLAAINALVALTDIE-PDLVLPRLCKEFinase---------nsedGNPSAKYEFRM-----KLGESLQLAIKHT 613 
XP_002294293 1194 GDG 1196
Q22528        989 GKL 991  Caenorhabditis elegans
EFP09560      817 GET 819 
EGT33757      815 GEY 817 
XP_002424701  868 GEV 870 
XP_020429690  924 GDV 926 
XP_004350788  942 GDT 944 
Q54Y12        313 GEM 315  Dictyostelium discoideum AX4
XP_004994939 1084 GSA 1086
XP_002108957  614 GEL 616 
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