Conserved Protein Domain Family
RTP1_C1

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pfam10363: RTP1_C1 
Required for nuclear transport of RNA pol II C-terminus 1
This domain is found towards the C-terminus of required for the nuclear transport of RNA pol II protein (RTP1). RTP1 is required for the nuclear localization of RNA polymerase II. This family is found in association with pfam10304.
Statistics
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PSSM-Id: 402124
View PSSM: pfam10363
Aligned: 125 rows
Threshold Bit Score: 74.8089
Threshold Setting Gi: 224010671
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002294293 1045 AEHDLQSSQPPFRAKGVVSLRHIARSL--VdagattpsdeviiteihsstpdrsttkvdVALVARSLARICLIALSDSES 1122 Thalassiosira...
XP_015789704  467 AVRCLNSNFMPQRAHGLVILRNLIDAQhqS-----------------------------TIDHKSELFTLIKACLSDPDS 517  two-spotted s...
XP_002416303  287 VWRELHDGMVPIRGHAFIGLRRLLEEGdaE-----------------------------TLGHADEVLEACQAGIQEEDS 337  black-legged ...
EKC41128      856 AMEEICDPLIPVRGHALITMCRLMKQRdpE-----------------------------AVSKQGMILKIFQENLSHPDS 906  Pacific oyster
XP_003730334  999 AMKDLTDPLLPVRGHALIMLARLLKEKdpR-----------------------------ALAESETLLKIFEEHLSDDDT 1049 purple sea ur...
EDO42830       12 ALTQLCDPLLPVRGHAMLSLASLINHRdpK-----------------------------AMSKVDTLLKIFEEQLAHDDS 62   starlet sea a...
XP_019850389  776 ALKDIQDSLIPVKGHGLQQLSQLVRKKdsE-----------------------------TLAHIDHTIELFLTHLGHSDT 826  Amphimedon qu...
XP_001745624  745 LAGQLAAPQIPLRAHALVEMRKFLAANpdT-----------------------------AQAHATVLAGLYLSQLKHEDS 795  Monosiga brev...
Q22528        885 WIEELHDDEPAIKGGALMQIARVFRNRtyHc----------------------------QRLFEYGVFDAVKDMVADDDS 936  Caenorhabditi...
EFP09560      706 WIDELHDDEPAVKGGALILIAKAFRAKswHc----------------------------QKLLDYAAFDTVKDMVSDTDS 757  Caenorhabditi...
XP_002294293 1123 YVYLASIQTLVAIGDVCPSEIIPLIGILVakgtaefqvskpdvgvSSVVLSL------------SSEQRI-----KAAEA 1185 Thalassiosira...
XP_015789704  518 YVYLAAVNALASLALAHTESCLPTLIEAY------------------HDRDR------------SVRERV-----SVGES 562  two-spotted s...
XP_002416303  338 YVYLSAIHALAALVERDLDGRLPWLAEQV------------------ALEHL------------SVEARL-----NLGEV 382  black-legged ...
EKC41128      907 YLYLSSVNGLVAMADIFPDIVIPCLVQEFrgsvsqst-dksgklpGQTGGKH------------GAETRM-----KVGEC 968  Pacific oyster
XP_003730334 1050 YIYLPCINGLVALAGIHPDRVMPHLCSMSisgyat----dqskqwSATSRTV------------SLEKTL-----KMGEA 1108 purple sea ur...
EDO42830       63 YIYLAAVQGLVALAGLRPDPVLPHLARQFat-------------cAPAIPQR------------SPELRM-----KLGEA 112  starlet sea a...
XP_019850389  827 YIYLPSIQGLVELASLVPDRIIPLMCNEY----------------AQFNEARkarascgtlegkSIDWLV-----KLGEG 885  Amphimedon qu...
XP_001745624  796 FLYLPAVNGLADLVAMTPKTMIATLLQEW------------------ATKSM------------SPEYRM-----KVGEV 840  Monosiga brev...
Q22528        937 YVYLSAINCLCEMGLY-NKNMFEDTIEYY----------------EEMSNQP------------QKDTKM-----II--R 980  Caenorhabditi...
EFP09560      758 YVYLSAINCLCEMALF-DRHVFDGFIEYY----------------EEIASIP------------NKDERLiirvgRTSEA 808  Caenorhabditi...
XP_002294293 1186 LIFMIRRRGD 1195 Thalassiosira pseudonana CCMP1335
XP_015789704  563 LVWVCKYLGQ 572  two-spotted spider mite
XP_002416303  383 FLRVCKQLGE 392  black-legged tick
EKC41128      969 LVQTSRNLGK 978  Pacific oyster
XP_003730334 1109 LVRATRQLGE 1118 purple sea urchin
EDO42830      113 LVRATRACGP 122  starlet sea anemone
XP_019850389  886 LVRASRECGD 895  Amphimedon queenslandica
XP_001745624  841 LVKVCRLLGQ 850  Monosiga brevicollis MX1
Q22528        981 VGRVAEAIGK 990  Caenorhabditis elegans
EFP09560      809 LGKLLIARge 818  Caenorhabditis remanei
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