Conserved Protein Domain Family
Fmp27_WPPW

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pfam10359: Fmp27_WPPW (This model is not part of the current CDD release)
RNA pol II promoter Fmp27 protein domain
Fmp27_WPPW is a conserved domain of a family of proteins involved in RNA polymerase II transcription initiation. It contains characteristic HQR and WPPW sequence motifs. and is towards the C-terminal in members which contain Fmp27_SW pfam10305.
Statistics
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PSSM-Id: 491102
Aligned: 85 rows
Threshold Bit Score: 332.669
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EMR62756     1279 GIKVRFDSFMVDIHQRREEFNIRDRGRKTNARTTGMKIHAAQLDLISADVRAVSASIKGTTTEAIkRNSIstlitqnedd 1358
Q06179       1717 GLKAKSSHFIMDLHQRKEVLTEYQAGLNVRRRVMKLKFLAGDVVCQDVDIRTVSGEFSKLNYIEEkEDAE---------- 1786 Saccharomyces...
XP_022464513 1678 GTKTKTKRFTMDLHQRKELVTEYNPELDIRKRVKKMKFLEGEVEMDDIDIRTIHGKFGKLAYVEQkEDAH---------- 1747
XP_003954883 1675 GVKGRAAHFILDLHQRKEVLTAYNKEMNVRKKVQKLKFLEGDVILHGIDIRVIRGELERLKYVEQkEDAR---------- 1744
XP_003669576 1705 GLKAKASHFKMDLHQRKELVTEYQEMLDVTKRVKKLKFLEADIIVNNIDVRTLHGMFRKLNYIEEkEDAE---------- 1774
XP_003677684 1711 GLKAKVGQFVMDLHQRKEVVTEYKKKLNVTKRVKKLKFLSADILTHRIDIRTVHGIFHKLNFIEEkAHAK---------- 1780
Q6FSI2       1718 GIKAKAGRFLMDLHQRKEVFTEYQEELDRIKKVQKLKFLDGLVATFDIDIRAVHGLFTKLEYTEQrEDAK---------- 1787 [Candida] gla...
XP_003683122 1665 GLKAKTEHFVMDLHQRKEVMLKYQEGLDKTKKIMNLKFLEGDVSTAAIDIRAVEATFKSAKFVEEkEDSN---------- 1734
Q75D43       1651 GLKAKMDKFVMDLHQRKEVLHERNKGLDVIKRVMRSKFKEGDVSTFNIDIRTMDAVFKPMAYDGGlNTPE---------- 1720 Eremothecium ...
XP_002554992 1689 GLKAKTEHFVMDLHQRREVMHEYKPVLETTKKNSKLAFNGGDVSTFEIDVRTVRAQFKESSSVDReSSL----------- 1757
EMR62756     1359 vadlshFTIPDNDFSWIDMDDFVELDWILPSESNPDTKILPLAYAPRVTYFRQTDIGGTIDGDPD---RTSPFGNEPTHF 1435
Q06179       1787 ------YDIFDNDMSWLDITDFQDAFFINPDNYLPKIKIMPFAFSPQFAYQKRASYGDKYQVDPKtckPITPFDNRVSHG 1860 Saccharomyces...
XP_022464513 1748 ------YDIFDNDLTWLDLTDFQEPFFVDVDKYLPSVEIKPFFHAPNFIYQKRSSYGDKFQLDPVtyqPTTPFLNNVSHN 1821
XP_003954883 1745 ------YKIFDNDMAWLDLTDFKEAFFIDPELYLPNIEIKPFAYAPRFIYQKRASYGDKFQVNPNtyePIKPFRNDISHA 1818
XP_003669576 1775 ------YHIFDNDMRWLDIMDFQEAFFVDVNNYFPVIEINPMLYAPGFMYKKRASYGDKYQVDAKdykPIKPFENKVSHN 1848
XP_003677684 1781 ------YDIFDNDMSWLDISDFQEAFYIDVSNYVPNVDIRPLLFAPEFVYKKRANYGDKYQLNPKtyeRIEPFNNGVSHD 1854
Q6FSI2       1788 ------YDIHDNDMQWIDLTDFQEAFYVEIDNFLPNIKILPMLSAHKFIYSKHASYGDKYQVDPKtynPIKPFDNSISHD 1861 [Candida] gla...
XP_003683122 1735 ------IQIPDNDLAWYDPTDFEDTDFIDIDSYVPNLRMLRLLYSCQFKYRRRASYGDKFQVDPNthkRIVPFKNNISHK 1808
Q75D43       1721 ------YNIFDGDMTWYDPLDFKEFKYHALDNYVPIVTIGPLLYAPKFVYRKKASYGDKYQVDFNtceRVKPFDNSISHT 1794 Eremothecium ...
XP_002554992 1758 ------FEISDDDMTWFDVADFKEVHCDSLEDRIPSVSIDSLVYSPKFVYRKHASYGDKYQVDFEtceKIEPFQNSNYHD 1831
EMR62756     1436 CIMSQDDdprRVQSQLIQTRLDQLDGQIA----TNIRDVGEAELRNIRtdgkdpevsLEFETLNRHTNVLQDKHTFMSSM 1511
Q06179       1861 CTLGHNV---SLRTDLVEKRVTVLKKFRE----KLQEGIRKNKSAGVS-----------EENLNDLLSKANSSVENAELL 1922 Saccharomyces...
XP_022464513 1822 CVLGREV---QVPTKVLEDRLKNLTSFQT----QLTNDYLKTEDPSKK------------KLLNYLLEKAKVGLDSLDLL 1882
XP_003954883 1819 CVLGQRV---DIPSETLDNRISQLSEFRStwetRLDEELMKPSNEQNK---------LKIKDYETLVHKAKVSLESVDLL 1886
XP_003669576 1849 CILGSPV---EIHPEVFQKRLDVLKAFEM----KTTQELNVVEDPEKK------------KKLEKLVRDTRSTIKDVQTL 1909
XP_003677684 1855 CIMGEHI---EIPPSLIEKRLEVLEEFEL----KIKAKLRKSIDPTEK------------AKLTTFLNMTAQAKESVELL 1915
Q6FSI2       1862 CAIRKPF---TPNFEVIRDRLERLKHVKA----TIESNHYGMDSESEQ------------KAHEKYLVRSEASVRNVQSL 1922 [Candida] gla...
XP_003683122 1809 CVFGEPL---KLPFKALRERKERLIEYKD----KLEQKLSGNDDESDV------------TFIKRHIKKTNTAIEKVELL 1869
Q75D43       1795 CCLKPQI---EVPLETVEERKDFLLKKRR----EAQRLLEVATTTNER------------QHILSELDKLDAVLSKVVEL 1855 Eremothecium ...
XP_002554992 1832 CSLHDNV---RSPVYLIDNRLKALEAKRK----EVENQINEISTESGK----------NKRDLSLKLGKIKEAISQVSKL 1894
EMR62756     1512 LEEMAFNIQ-------------NKDRDSNSsfADEEdpqmsdthantedgeanVPSGTEFASDFKNRFVVHNMQLKWNNL 1578
Q06179       1923 LKDFQKIFkqh---------eaGQTEQPFHfdSLNL-----------------LKNTKKTLKQFEHRFFIFNVLLKWNED 1976 Saccharomyces...
XP_022464513 1883 HDDVSALCYers--------esTNDRRVYSipGVQI-----------------LDRSTVSTKEFENRFFIFNMLLKWNED 1937
XP_003954883 1887 LDDLSALCYerd--------vsTSAQRTYTmpTVQL-----------------LDRSSVTKKSFENRYFIINMLLKWNES 1941
XP_003669576 1910 LVDFNSVCPktg--------rvLTSSGKLKysALQL-----------------LHDSKMCNEAFENRYFIFGMLLQWNES 1964
XP_003677684 1916 LADFNSVCPktg--------kiLTESGCFRypSLQL-----------------LHNSKLRNKSFENRFLVFNMLLKWNEK 1970
Q6FSI2       1923 LEDLEIMTglk---------ekIDSSKAYNypAIQL-------------------IQDTNSESFDNKYYVYHMLLKWNEG 1974 [Candida] gla...
XP_003683122 1870 LKDFETLKrkq---------dcENFEPSFNypMINM-----------------VQNSVIAANEYENRYHVCEMLLKWNEG 1923
Q75D43       1856 IEAIKNIQNderad----shneKTTDEGFKysIRDF-----------------VDRSTGSVSPFENKFFVFCMQLKWDED 1914 Eremothecium ...
XP_002554992 1895 LTDFEEFEDydvteqgdvsasnTSNEKDNDyaECEW------------------LTKKSFSKTFEHRFFIFCMFLKWNET 1956
EMR62756     1579 LRNIILRYSHQVSQRRGFVYYLSRPAVKFILDIVEEQARAKSNSKPPktp------pgaGGASAPKPSKRFS-------- 1644
Q06179       1977 ARSAIFKFFYYANLSNEFASLASGKGLREFEDVIKQREMTDDTTSMEaipe-----gtdKANTTKQCHSCDDtef----- 2046 Saccharomyces...
XP_022464513 1938 IRDIIMKFLHYLSLASKFSSLSSQKSLKIFEEMMKHRIMNEKKMDMEtineeqepidlqMGSGNKFGNKTDDlmh----- 2012
XP_003954883 1942 VRDVIFRYMYLLTLSNEFASLASQKTLHVFEDMLQHKTSSEWKPGMQpakekpiekktfKNNFNDYPNKTPDi------- 2014
XP_003669576 1965 VRDVVFKFWYYFSLSKDFNILSAQHSLEIFENIIKERISSEGKPNSPlddn----tsasRIKSHFQFEDTNDqsv----- 2035
XP_003677684 1971 VRDVVLRYLHFFNLTSDFHKLTSQHALETFDNILKQRLSQNQKSELEshge-----pieRLNSKEQFRNAEDqsa----- 2040
Q6FSI2       1975 VRDIAFKFLHFSNLTHQFMELASHKTNRMFNDIINKRQQKDNVNEEEdiss-----kiqRVKSEVEFDNANDdeh----- 2044 [Candida] gla...
XP_003683122 1924 TRNAVFKYLHYLSLSRQLSSLSEQQCSKLIDEIIRRKNAPGDTDRNSids------qnrDGSQFEAELNRSNeen----- 1992
Q75D43       1915 ARDVIFKYLHLLELSSQAVTLTRSKTLQVIERLCHRKLAYTKSDESIfssisdipidghDLSTAETSSEEQPk------- 1987 Eremothecium ...
XP_002554992 1957 VRDTVYSYVHLIDLNREFAYITNHKAVQKLEDFLRDNADENIKKL----------------STNETSKHEKTpslmnesv 2020
EMR62756     1645 ---ELNPDFEKIMQQ----MIQDGrkfvntdesdsssegpnmedltsnisdEFTPQSSFHVRLIAPQIQLQSDKNKKHVV 1717
Q06179       2047 ----ttENLLNIFEKnitqLSCDI---------------------------KNKIHHKFFVQFITPQIQLTSLENPEACV 2095 Saccharomyces...
XP_022464513 2013 ----lsEICLDLFENgittVEADI---------------------------EYLVHKNTFLQLVAPQVQLSMREEPDMCV 2061
XP_003954883 2015 ------KTIFEMFENelleLPVTL---------------------------DHIIHKNNFIQFIIPQIQLTTEDDPDSCV 2061
XP_003669576 2036 ----ltAELLEMFERglseLSCSF---------------------------DFNKKENHYVQFITPQVQLLTKEEPDSCI 2084
XP_003677684 2041 ----inNALVELFETalssLQCSI---------------------------KSVRHENHYVQFITPQVQLMTKEENDSCV 2089
Q6FSI2       2045 ----vkAALLEMFEEglsqLGIDI---------------------------NHSISRNHFVNFICPQIQLISDDDPNICV 2093 [Candida] gla...
XP_003683122 1993 ----fnEVLEKIFKEgiseLGVDI---------------------------DYEVHHNHIVHFISPQIQLITEQEPDSCV 2041
Q75D43       1988 -----sQSLFELFEEkiysLNTDA---------------------------PYMTHDDHFIQFVAPQIQLSTKESPGTCV 2035 Eremothecium ...
XP_002554992 2021 rslDANEDILSVFEEglrtLNAGF---------------------------DYITHDNHVVQFIAPQIQLTTTRKSEVCT 2073
EMR62756     1718 LITAKGMELKVVEVMDKARLSDEVSGLVQRRFLLRMDSAQFFVTHQKWFS-G---QLLSMYSGNTYGTPSGTSWPPWVPM 1793
Q06179       2096 LVSSPFFMLKTLEFDANTTSNTYMQDIFLKRHGILFGNANAFLFNKKDYQ-E---FFELYFGSSSYGQDKKEQWPPWLGL 2171 Saccharomyces...
XP_022464513 2062 IVTAPNIITKNLSF--EQVGMEDHDDQFLKRFGVIVNNANAFLLRKADFK-N---KYELYFDMNSYGQKKGTEWPPWLGI 2135
XP_003954883 2062 IVTAPNVISQMISFEPKLFENIYYQDRFMKRNGLIANNANAFIFNKQNFK-N---KYELFFDMSSYGQVKGAEWPPWLGV 2137
XP_003669576 2085 IVSTPNILLKVHAFEEAGHEAINMNNSFLKRTGVFFTNANAFLFHKDVFK-N---RFALYFDTNSYGQKKGSDWPPWLGL 2160
XP_003677684 2090 IISAPNVMMKVLAFEDERTEEINIDNDFLKRYGIIVTNANAFLFHKGDFK-D---NFELFFDVSSYGQSKNSKWPPWLGL 2165
Q6FSI2       2094 LVSTPIILLKVLSFDEETPDNVYLENTFLKRYGLFLSNANAFIFHKERFD-K---YPELVFDASLYGQEKGSDWPPWLGA 2169 [Candida] gla...
XP_003683122 2042 VVAAPSIMMKVMSF--GNKEAQYSDEAFLKRYAVHFIKGNVFHFRKDEYHvDregFHEVFFSLSGYGQEDETQWPPWLSL 2119
Q75D43       2036 LVTAPSMKLKIIDFDSNTSDNEYNENVFMTRYTAALIQANVFIFQESDYK-V---FENSLFNPKGYGAKSTESWQPWLGL 2111 Eremothecium ...
XP_002554992 2074 MITAPSIKLKTIGFDTNTTENENNSDVFMNRYSVALLKANVFVFHKDNFE-N---YHDVFFSSEGYDQLKGDNWQPWLGV 2149
EMR62756     1794 EV 1795
Q06179       2172 EL 2173 Saccharomyces cerevisiae S288C
XP_022464513 2136 Eq 2137
XP_003954883 2138 EI 2139
XP_003669576 2161 EL 2162
XP_003677684 2166 EL 2167
Q6FSI2       2170 EV 2171 [Candida] glabrata
XP_003683122 2120 DL 2121
Q75D43       2112 EL 2113 Eremothecium gossypii
XP_002554992 2150 EL 2151
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