Conserved Protein Domain Family
NCBP3

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pfam10309: NCBP3 (This model is not part of the current CDD release)
Nuclear cap-binding protein subunit 3
NCBP3 and NCBP1 form an alternative cap-binding complex in higher eukaryotes. NCBP3 binds mRNA, associates with components of the mRNA processing machinery and contributes to polyA RNA export.
Statistics
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PSSM-Id: 519311
Aligned: 71 rows
Threshold Bit Score: 48.293
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002551259  83 IRPESLKIIG--VDNLSTKNIENYINYYINYnqieyeevdlitnelikgkkfqlkenqdcIDFKIEWINDESVNVTFRNI 160
XP_002173069  44 IRRNALHLIG--LTDLSQNQVSEFVTEYFSE-----------------------------PKCVFEWVNDDKCNLVYPDD 92 
6_pfamImport   1 TRLEALHLHG--TDHMKTEDIFSLFSTH--------------------------------SPASIEWLTDKTCNAVWLDQ 46 
XP_007254217 123 IRLEALHMTG--LDDMSTQDVFGYFKEY--------------------------------PPAHIEWIDDTSCNVVWLDD 168
EDO39695      29 IRPDALLVFG--VNEMSTKDVFEYFKVY--------------------------------GPGSIEWIDDASCNVVWDDE 74 
XP_009010081 222 IRYNCIHLKG--TNDMSTKDVFDFFKLF--------------------------------PPSAIEWIDDESCNVVWLEE 267
XP_018741539  62 LRPIALHLEGepISQLSTSRLMAYVGHTGV------------------------------KAKGIEWINDTRCVVVFESY 111
XP_001729822  71 IRFDALHLEGgpITQLSTSRLMAFVAYSGA------------------------------HAKGIEWINDTRCVIVFNSY 120
GAC74175      97 IRLDTLLIEGapITQLSTSRLFAYLTHYGA------------------------------QPLGLEWIDDQRCKVVFADE 146
EMD41008      87 IRNNAILLKGppIAHLPTSNIFAYAIHFDAH-----------------------------PDMALEWIDDTTCILVFPSR 137
XP_002551259 161 QDSNKVLKE 169
XP_002173069  93 DVCRSALFH 101
6_pfamImport  47 EMCAKALLN 55 
XP_007254217 169 VTSTRALIN 177
EDO39695      75 HTAKRALLE 83 
XP_009010081 268 ITACRAMLQ 276
XP_018741539 112 AEAVNGLQR 120
XP_001729822 121 ERAVEGLRH 129
GAC74175     147 RSARLALEY 155
EMD41008     138 TNARAAFKH 146
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