Conserved Protein Domain Family
Fmp27_SW

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pfam10305: Fmp27_SW 
RNA pol II promoter Fmp27 protein domain
Fmp27_SW is a conserved domain of a family of proteins involved in RNA polymerase II transcription initiation. It contains characteristic SW and GKG sequence motifs.
Statistics
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PSSM-Id: 402084
View PSSM: pfam10305
Aligned: 129 rows
Threshold Bit Score: 71.4357
Threshold Setting Gi: 384493558
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EPB86183     1233 AWQKLQEHNSNSWKRH-I-DAALLKENNTYVRI--QSANYRHTMlNGQLDEVFDDpatdektqylsemfcirIVDLPKYP 1308 Mucor circine...
CCA66556     1270 ARQRLRELFSNMWISQ-I-QDARAIAMVKEENL--TMRFREGKTvHMDEVIPLP------------------LYVPPNLP 1327 Serendipita i...
ELU37729     1219 AYRRLQQFNSSAWFEA-FaNGKKALTKHEETQL----RYIGQIPgSLEHKPGIPLd----------------IRPAEVVP 1277 Rhizoctonia s...
EKM59200     1270 ARLRLNQVHSGVWISR-F-KQARVQQIRQQQAD--SRRLYIKSSlYGDNDDDLVP-----------------IVEPAFVP 1328 Phanerochaete...
EDR12459     1299 ARKRLDDVHALDWTLR-L-EKLRERRSKEEGSV--LHKVYGTYPsLSSTPIPDLVs----------------PEPLIAAP 1358 Laccaria bico...
EFJ03000     1217 arRRLDEVNF--WTYRtLlDQLRNSREESEMSV--LENLMGRKRrAVPVQV---------------------VVDEKLRV 1271 Schizophyllum...
XP_007329011 1239 ARRRLDEVHFLDWKFR-L-QNLREAWSNHETSI--LHKLYGPQGtTGRAPFPRSKv----------------STNGMGIP 1298 Agaricus bisp...
EFI27721      987 ARQRLDKVHIIDWKMR-I-DRLSNIRTKAEEAN--LYRLFGSNRpALDEIAPNLVp---------------vIDRQKDTS 1047 Coprinopsis c...
EGO01866     1214 ARERLYWAHSVDWTMR-YrEKRREQFTREATSLrpLHKPSTPKQpMNVPDFIK-------------------VPPPDCAP 1273 Serpula lacry...
EDP45555      932 MRERLHALQSSNWIRRwHnARHVRSQRERALYAyiHKRLYNPHEvHEGDSDRQ-------------------VRTWPAEP 992  Malassezia gl...
EPB86183     1309 PLLDLTMKHTSLDFRHP-DF--ELDQTRQFIFDVGKGQPLDTPLS 1350 Mucor circinelloides f. circinelloides 1006PhL
CCA66556     1328 PLFRLTLNGVSVAVQAP-KW--SEEDRATFMEDLGNGLPRDTEFT 1369 Serendipita indica DSM 11827
ELU37729     1278 PLIRLLFDGVRVELAQP-TFgeTGSSLPEFLKRTGE-LPLDTEYT 1320 Rhizoctonia solani AG-1 IA
EKM59200     1329 PMFRLKCEDLNLKLAGP-SF--TVDGLPDFLYKEGGGMPKDMKYS 1370 Phanerochaete carnosa HHB-10118-sp
EDR12459     1359 PLLRVALHNLSLTVSPP-SF--PTKRLADFLHDQGGGVPKNTLFS 1400 Laccaria bicolor S238N-H82
EFJ03000     1272 PLFRATLSSVQVLLGPP-SF--PMDHLAQFMHEQGDGLPLDTVFT 1313 Schizophyllum commune H4-8
XP_007329011 1299 PLFRVYISSLKLSVSLP-TF--PLEELPNFLHDQGGGLPIGTEFS 1340 Agaricus bisporus var. burnettii JB137-S8
EFI27721     1048 PLIRMALHNLNLIVGGP-SF--PLEELPTFLNTQGSGMPTDTQYS 1089 Coprinopsis cinerea okayama7#130
EGO01866     1274 PLLRATFHHLKLKVTPP-SF--PLSKLPDFLHEQGKGIPHGTLYS 1315 Serpula lacrymans var. lacrymans S7.3
EDP45555      993 PLCRLSMTMFSFELSQPtSF--ALDDTHTWLHQQA-GNPVDLEYT 1034 Malassezia globosa CBS 7966
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