Conserved Protein Domain Family
Fmp27_SW

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pfam10305: Fmp27_SW (This model is not part of the current CDD release)
RNA pol II promoter Fmp27 protein domain
Fmp27_SW is a conserved domain of a family of proteins involved in RNA polymerase II transcription initiation. It contains characteristic SW and GKG sequence motifs.
Statistics
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PSSM-Id: 491074
Aligned: 118 rows
Threshold Bit Score: 90.6729
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EQB43427      1147 AREKLDAYNAQSWKKRIDRFYSMAKNGMKEI----RGMFWGP----DQ-LPDDLEDTEN---ILEVPQRPALMSALITDL 1214
11_pfamImport    1 AYRRLQQFNSSAWFEAFANGKKALTKHEET-----QLRYIGQi---PGsLEHKPGIPLD---IRPAEVVPPLIRLLFDGV 69  
2_pfamImport     1 ARERLYWAHSVDWTMRYREKRREQFTREATS----LRPLHKP-----StPKQPMNVPDFi-kVPPPDCAPPLLRATFHHL 70  
XP_001876723  1299 ARKRLDDVHALDWTLRLEKLRERRSKEEGSV----LHKVYGTyp-sLSsTPIPDLVSPE-----PLIAAPPLLRVALHNL 1368
XP_002911215   987 ARQRLDKVHIIDWKMRIDRLSNIRTKAEEAN----LYRLFGS-----NrPALDEIAPNLvpvIDRQKDTSPLIRMALHNL 1057
XP_007329011  1239 ARRRLDEVHFLDWKFRLQNLREAWSNHETSI----LHKLYGPqgttGRaPFPRSKVSTNgm------giPPLFRVYISSL 1308
13_pfamImport    1 AQQRLYQIHSAAWKSSFTQAGEAQQRREGSY----MQRAFGKi---LNpKGTEDLIS-----VKPLGSVPPLCRLTLQHL 68  
EED84684      1235 ARQRLHQVHSVAWRSAFVKAKQTQAAREVSY----AYYAARTr---CEeDTFGDLVR-----VNPLRSIPPLFRLTFDSL 1302
21_pfamImport    1 ARQRLFQVHSVAWRTAYQKSKAAQAEHELRR----LRHTLGDh---ADaKPVDDIVP-----INPPNNLSPLFRLTFNTL 68  
XP_001732769   932 MRERLHALQSSNWIRRWHNARHVRSQRERALyayiHKRLYNP-------HEVHEGDSDRq--VRTWPAEPPLCRLSMTMF 1002
EQB43427      1215 QFVIDKP-TFAMKD--LPDFIHSVGKGMPKDMKYGL---------QGNPQG 1253
11_pfamImport   70 RVELAQP-TFGETGssLPEFLKRTGE-LPLDTEYTLlvplnirweMRYALV 118 
2_pfamImport    71 KLKVTPP-SFPLSK--LPDFLHEQGKGIPHGTLYSLlvplhlhftLTSLQC 118 
XP_001876723  1369 SLTVSPP-SFPTKR--LADFLHDQGGGVPKNTLFSLlipmhihftLSSLQI 1416
XP_002911215  1058 NLIVGGP-SFPLEE--LPTFLNTQGSGMPTDTQYSLliplhihftLTAFKI 1105
XP_007329011  1309 KLSVSLP-TFPLEE--LPNFLHDQGGGLPIGTEFSLlvplhirftLNTIRI 1356
13_pfamImport   69 SLMLSRP-SVSDAA--LPDLLHTLGDGIPRDTQYSLliplhirftVSSLRL 116 
EED84684      1303 SLHLIAP-PSLINN--VPDFLFAAGNGLPKDTEFSLlvplhlnftVASLRF 1350
21_pfamImport   69 ALTLESP-SSLVKN--VADFLHDAGSGLPKSTEFSLliplhisftVSSARF 116 
XP_001732769  1003 SFELSQPtSFALDD--THTWLHQQA-GNPVDLEYTTlipmharicMSECMI 1050
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