Conserved Protein Domain Family
ssDNA-exonuc_C

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pfam10141: ssDNA-exonuc_C 
Single-strand DNA-specific exonuclease, C terminal domain
Members of this set of prokaryotic domains are found in a set of single-strand DNA-specific exonucleases, including RecJ. Their exact function has not, as yet, been determined.
Statistics
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PSSM-Id: 490935
Aligned: 31 rows
Threshold Bit Score: 177.084
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013372638 569 QIFDYRGVSD---PLAELERGLRIFHPSleerknnvavlihPSSMLRPSSSVSAeslwlydkDGSVTPSEGQKdtqhfvk 645 Paenibacillus p...
Q1G9R6       556 rIVDFRGQEN----LLGFADKYLLFDER-------------NLSQAMNHFGITKeqislakdNEDLSQQ----------- 607 Lactobacillus d...
Q834G5       564 QLFDFRGKNNqtkPIPSEATAYLLFDEK-------------NQKFISDPTA-NIivwsnqeeLVEAVSQNQIE------- 622 Enterococcus fa...
WP_015509759 564 QLFDYRSKRSrqgVSLGSQTLGVLFKQK-------------LPRELQGFCG-QTtifdsvtaLEDTFRAGQFQ------- 622 Enterococcus ca...
WP_015076606 568 QIFDMRGTHIs-pTIWQEDACFVFFNKK-------------IQEKQQTNIPAGSqvefienlAEASAVTTTKE------- 626 Carnobacterium ...
Q38W52       567 vVLDQRSNRLt-kQLFQSTGDYVFFNDK-------------MREQLQSYLPAGSqallatdeQVATSQ------------ 620 Lactobacillus s...
Q1WT52       572 vveiqRKNKLt-kSMFQQQATYVFFDKK-------------LYNQVMPYLADDSeaylynfsDDKKLNCD---------- 627 Lactobacillus s...
WP_014215335 572 QVIDRRTSNLn-pDMFKESAEYIFFNEK-------------LLKLLQNKIPNRTmnlyndvtNLSKDA------------ 625 Pediococcus cla...
WP_014939676 573 pVIDERTHELh-rKMFATVGTYVFFHEK-------------VLKQLQGYVGGQSqvvmydqvTEASANGN---------- 628 Lentilactobacil...
WP_011101649 570 QVIDARTQHLs-aHLFQAPGVYLFFHQR-------------LLKKVEQYLGSQAqavwvgdtKTDLTAVTANQ------- 628 Lactiplantibaci...
WP_013372638 646 SLFVLEPPDTPEQFHALWsTFENVENVFLLHSISERGGRLVSPDRELFKRIYIVLSRMGTqlIDEKAMLPALSRQCSCSV 725 Paenibacillus p...
Q1G9R6       608 VVSVLDVPANEAQLNFVL---AKPYRQLYLRFQLDQLPGETLPSRGNFGLVWQYFLAHPG--LKPNDYMQA-AGQLGMDP 681 Lactobacillus d...
Q834G5       623 QLVFVDCPVEAITVKEIV-EATEIQRIYMMFISPEEAYLNGMASREQFATLYKFILQQKE--VNLRSQLSKVANYLNIQE 699 Enterococcus fa...
WP_015509759 623 EIAFLDCPADPAVIKEIV-QALQASRVAFVFYSTEDAYLDGVGTREQYSRLFQLIKQQPR--LDIRYKLKMVADYLKIPQ 699 Enterococcus ca...
WP_015076606 627 KIVFVDCPNQTELVTEIL-RNTQAEKIIACFYSGDDSYLNGMPSRQQFGQLFKFAASHRD--VDIRHKLKVLSDYLKIKE 703 Carnobacterium ...
Q38W52       621 ELIVVDEPADLTAFEQFY-QQQQAAKLSLIFYAKHSAYLEGMPTKQQFATFLVYLRKHPN--IE-KARLAELAVYLKLQL 696 Lactobacillus s...
Q1WT52       628 TLIVVDCPDNIEKLKSLL-AKAIVKHFIFVGYTRENTYLNGLPTREQFGRLYKFSQTHTN--VSIRRDLQKLADYLKLKR 704 Lactobacillus s...
WP_014215335 626 TMVLVDCPTEVAQLKEVI-SNNQPEKIVTYFFRQVDYFAEGMPSRENFKQVFGLLNSGDI----AKDSVSKISNSLRIEQ 700 Pediococcus cla...
WP_014939676 629 RLYIVDCPDVLDDLVQLL-AKVQPQTTVLYLYKKQLISKIGMPDRNSYAKLFRFVKEHSN--VNIAMQLKQISEHLHISA 705 Lentilactobacil...
WP_011101649 629 AVFIVDCPDTLADMTQVL-STIALDQLTLYLYRQESVYLTGMPNRAQFAKLFQFTAAHHD--VDIHHQLTLVAKHLHIER 705 Lactiplantibaci...
WP_013372638 726 RMLSKVLDIFEDLEFLTRTDGQFRFVSNPPKRDLTASPRYQELYNMAEMERYLLDADTTQMTSWI 790 Paenibacillus polymyxa
Q1G9R6       682 DSIKFILRVFFTLDFVKMEEDRLLPKPSPTKKSLDDSAYYRSVKAEYAFANKLRTISSDelirya 746 Lactobacillus delbrueckii subs...
Q834G5       700 KLLIFMIQVFFDLGFVTIESGVLNSIEKPDNRPLTESQVYQQRLKKIKTEEFLLYSDCQTIQQWL 764 Enterococcus faecalis
WP_015509759 700 KLLIFMIQVFSELEFVTIQDGVLNKTADPVSRPLTESHLYQQRQKLIKTEEFLLMSDLSTLRQWL 764 Enterococcus casseliflavus
WP_015076606 704 NNLIFMINVFFEVGFVTIENGIMNFVENAPKSELSEAVVYKNRLEKIEAEKLLVYSHFAELETWL 768 Carnobacterium maltaromaticum
Q38W52       697 PLMIFMLQVFFDLGFVRIERGLITAELQPEKHALESAPSYQKRLAKIEMEKQLVYSTFTEVKDWL 761 Lactobacillus sakei subsp. sak...
Q1WT52       705 ELLVFMINVFFEAKFVKIENGLMSGNTDVTPHNLEDTNSYQAYLQKMKAQKSLIYSKSTDLQKWI 769 Lactobacillus salivarius UCC118
WP_014215335 701 NNVRFIINVFFELDFVKIENGLLSINRSASQHSLEEAPLYKQREQMIQTQGDLLYSSSADLTK-L 764 Pediococcus claussenii
WP_014939676 706 RTIIFMVQVFLELDFITIQDRVINLNPNYTARDLKTAPSYHLRVEQLAAEKKLLVSNTHELVSfv 770 Lentilactobacillus buchneri
WP_011101649 706 NLLIFMIQVFFEVGFVKINDGVMNGVSNPAKADLHHAPSYQLREQQIVAEETLLYSKSAALQVWV 770 Lactiplantibacillus plantarum
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