Conserved Protein Domain Family
SpecificRecomb

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pfam10136: SpecificRecomb (This model is not part of the current CDD release)
Site-specific recombinase
Members of this family are uncharacterised bacterial proteins which are thought to be putative site-specific recombinase, although there is no evidence supporting this and may be misannotated. Sequence analysis predict helical transmembrane domains and seem to be distantly related to formate/nitrate transporters, with structural similarity to aquaporins. This may suggest that, actually, they are associated with transporter activity.
Statistics
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PSSM-Id: 519195
Aligned: 40 rows
Threshold Bit Score: 668.864
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012637191   22 ADTLRLIMDWLRPEDVS-RGVAaVVNRIEQLGIALDDHPALRERLRERMASELETARHLTLYTEIGLFSRRGFLREFAER 100 Thioalkalivibr...
WP_011766911   16 TALWIALVDRLRPPRAD-QTET-AVARLNDLAALLRTHPDLRAALRAALGRLFEERKQVSLYVASGLLPSTGFFSETARR 93  Azoarcus olearius
Q5NXJ1         13 LALWVALVDELRPAKAS-DTQA-AIAALRGLTHTLASRHDLAEGLCDALIRLFRERKQVSLYVSSGLLPSTGFFSETAHR 90  Aromatoleum ar...
WP_012585098   16 VRLWSALVDKLRPARPT-DTDQ-ATGNLRELGNLLARRPDLLANLRTAVLELFAERKQVTMYVSSGLLPSTGFFSETSRR 93  Thauera
jgi:Galf_1654  40 ITLIAELVAKIRPPKSS-QADH-AEHMIGALCHILGRRPDLRAALRAALLKLLGTHKPVSLYVESGILPSTGFFTELYRR 117
WP_015830749   17 VRLLADLVDQIRPARGD-HRDH-AAHAIQALCHVLNREPELAQALHEAVLGLLGGRRPVSLYVDAGIQPSSGFFTEMFRR 94  Methylovorus g...
WP_015832605   26 PKLVADLLAQIRPAKPE-QTDT-AIKSIQALCYLVSTDAAKACQLRDAILQLLSAYNPLSLFLIARHSVFTGFFSEMRRR 103 Methylotenera ...
WP_013148647   12 AKFIASLIAEIRPSKPN-QVEA-AIKAIQALCYLLNSHPEKARQLREAILRLLSEHKPISLFLVTRHSAFSGFFTEMRRR 89  Methylotenera ...
Q1H3U1         23 ARLIADLVAEIRPRHQS-DAGH-AAHAVQALCHVLNSDPGKAALLRDAIVSLLVGRKPISLYVDSGIQPNSGFFTELSRR 100 Methylobacillu...
WP_013107824   38 PEALKRLIDALRVTDEDeDNEI-VDAKFDELIALLREHPEYGSGLAAFILRLINKYRQITLYTDTGIASDQSFSSSVSRL 116 Moraxella
WP_012637191  101 LYERLNPRPLDHSNLKDVLAHVFHDPKDAQWVAALPNDAWWRLLEGL------GCLSSESGRITRRAREEVLYALEMLAV 174 Thioalkalivibr...
WP_011766911   94 LSDRLLPDVIDPAYMKDLLSAVFHRGDDEVWVRAIPDDCWQALLDTVld---dSPPPPRSPQLLPRGIGELLEAVRVLSY 170 Azoarcus olearius
Q5NXJ1         91 ISGRLLPEVVDTDYMKDVLSVVFHRKDDEAWVTAIPDADWVEFLRSVfgstpiQPDSTEEGYGLPHAAAEILEALRVLAY 170 Aromatoleum ar...
WP_012585098   94 FGSRMLPELLDTTHLKDLLSAVFHRVDDEVWVRAIADEAWQDFLRLLvg--hqTPMFEEDASPLPSAVGEILESLRVLSF 171 Thauera
jgi:Galf_1654 118 VSHKILPEAIDPQYLKDIFALVFTRHDGEVWVNAVPEARWLELLTEL------RFDEQAAETVLPLPVRGIMDAVRVLSY 191
WP_015830749   95 VGHKLLPEAVDPQYVKDVFGQIFRRRQDELWVIAVPDEVWLQLLEAM-------RFDEADTRLLEACKRGLLDAVQVLSY 167 Methylovorus g...
WP_015832605  104 ISHKILPEAIDGAYLLDLFSIFFTKTTDEIWVNAVPDSVWAQLIGVM-------RFDLADEALSLSCQQNLLAAAQVLSY 176 Methylotenera ...
WP_013148647   90 IGHKLLPEAVDESYLIDLFACFFTKTSDELWVQAVPDEVWEQLIVAIrf---nEATTDITEPIIESCRQNFLAATQVLSY 166 Methylotenera ...
Q1H3U1        101 IGHKMLPDAINPAYLKDLFGQIFPKKGDEIWVAAVPDEVWVQLVHAL-------RFHELSDDKVAECQKSLLDAAQVLSY 173 Methylobacillu...
WP_013107824  117 ISHRFLPLLPEEDSVVELANYLFDRNNDWKWVESISDERWDALVPLI-------RPDEQDLSLVAQAKNSILNAIVVLSY 189 Moraxella
WP_012637191  175 WVAAEELEPEFLRLDPSIAKRHSAFVALQRELAGYVEAYRAw------lSGDIEAFDDDKHVHVLIEQCREQLATFHKRA 248 Thioalkalivibr...
WP_011766911  171 HISAIGLDPELVRVDPGLEEYESPFLAQNAEVLAWLAAFETw------wQSGDALPPDDKHLEVMLQQCREVLQRVRKRA 244 Azoarcus olearius
Q5NXJ1        171 HVSAIGLEPELIRVDPTLEEHESPFLAQNEELLVYLDHYRRa------wRDGTELVEDEKHLQVMLDQCDDVVLRIRKRA 244 Aromatoleum ar...
WP_012585098  172 HVSAIGLDRELVRIDPHLEEHESPFLAQNAELLAYIGHYKAw------wTTPGALIADDKHLTVMLHQCDEVLQRVRKRA 245 Thauera
jgi:Galf_1654 192 RISSIGLEPELIRNEPSLEEFASPFLTQNDEVGKYLEQFALa------wEGSTLAFQDEKHIRVLLDQCAQIIQRIRRTA 265
WP_015830749  168 RLSASGLEPELIRSHPELENHASPFIIQNVELGNFLEAPED-------------DKNDIRHILVMLDQCGEVIGKIRRNS 234 Methylovorus g...
WP_015832605  177 RTAALGLEPELLKNYPELEQHSSPFIMQQAELAEFMSAQDV-----------DDAHVDIKHILVMLDQCKVIVAKVRRNS 245 Methylotenera ...
WP_013148647  167 RIAALGLEPELLRNHPELEQHTSPFIAQQIELAEFLASPDAdt----hdLNSKSNETDIKHILVMLNQCSEVVMKIRRNS 242 Methylotenera ...
Q1H3U1        174 RLAASGLEPELIRNHPEIEYHDSPFITQSVELQALLAMPLE-------------QQHDVGHILVMLDQCREVIAKIRRNS 240 Methylobacillu...
WP_013107824  190 RISGIGLHPELMNFYPELLNYSAAFVAQNQEAVLFVNQYRQaheldlmtDVIPDQDIDPAPLMVMVEQCEDIVDTLRKRV 269 Moraxella
WP_012637191  249 VTRGSSISLTHLLERLNQTLTRITTLLDVL---------------DPSDTTARRRAAAGLFRELVIRNARRNSLRALWQE 313 Thioalkalivibr...
WP_011766911  245 TRIGTSLTLTFKLERLRQHLERLTDLLALLdr-----------lgPERDVRRLTAPAVTLFKQLVHAECRKNRLSDYWSQ 313 Azoarcus olearius
Q5NXJ1        245 AKIGTSLALTFKLERLRQHLGRIADLLFLLqr-----------lhAERRIDAVATQIVGIFKQLVHAECRKNKLSDYWGQ 313 Aromatoleum ar...
WP_012585098  246 MRVGTSLTLTFKLERLRQHLERIHELIALLge-----------lrIRRVVEDAAPRIVRLFKTLVRAECRKNILSDYWGQ 314 Thauera
jgi:Galf_1654 266 SRSGTSISLTFLLQRLTQQLERMEYLLAILaa-----------lhEEKTGERARPLYVGLFKTLVSGECHKNDVRQHWRD 334
WP_015830749  235 SQTGTSIHLTFLLQRMTQQIRRLERLLRIIa--------------SQRAGESANLEFVHLLKELVSAECHKNDVRKHWRE 300 Methylovorus g...
WP_015832605  246 ALTGTSIHLTQLLQRILKQIARLEELLTILh--------------CFQHQESANAVIVPLFKDLVYSECHKNDLHEYWQE 311 Methylotenera ...
WP_013148647  243 AIVGTSIQLTFMLQRMAQQVSRLETLLEILdhtssddshnnqetsPKEAHSKANLKIVQLFKELVYSECHKNDVSEHWRE 322 Methylotenera ...
Q1H3U1        241 SQTGTSVHLTFLLQRMSQQVRRLESLLVILk--------------LVRSDADAGVAIVQLFKTLVSAERHKNDVRQHFRE 306 Methylobacillu...
WP_013107824  270 YKTGISIRLTNMLARLEQSLQRMRTLVELV----------------SDAEHKRDQAIADLTIEVVQTAKTRYSFSSLIES 333 Moraxella
WP_012637191  314 NIKLLSRSVTQQASETGEHYITTDRAEYLGMLKSGAGAGLIIAFMALIKIHIEALGLSAGWNTLWVSLNYGLGFVLIHIL 393 Thioalkalivibr...
WP_011766911  314 NVELLSLRMTESASKTGERYITTTRKEYLGILGSAALGGAIIALMAALKVLLARQHFAPLNEALSFCLNYGLGFVLIHIL 393 Azoarcus olearius
Q5NXJ1        314 NVELLSTRMTESASKTGEHYITSTRREYFGILGSAALGGLIIAVMTGLKIVLGRQGFAPLTEALAFCLNYGIGFVLIHIL 393 Aromatoleum ar...
WP_012585098  315 NVELLSLRMTESASRTGEHYITSSRSEYFGLFASAALGGLIIAFMAGNKVVLGSQGMAPLNELLSFCLNYGLGFALIHML 394 Thauera
jgi:Galf_1654 335 SMELLALRVTENASRTGEHYITSTRSEYFALLKSAMGAGLIIAFMAMIKLFIAAQHLPPLTEALLFSLNYGLGFILIHIL 414
WP_015830749  301 NMELLALRVTENASRTGEHYITNNRREYYGLMRSAMGAGIIIAFMAMLKIITAGKHYAPLTEAILFSLNYGLGFVIIHIL 380 Methylovorus g...
WP_015832605  312 NVEVMAVRVTENASRAGEHYITENRSEYFALMRSAMGAGVIIALMAMLKLVLAKQHFAPLLEAILFSLNYGIGFMLIHIL 391 Methylotenera ...
WP_013148647  323 NMEVMALRVTENASRTGEHYITGNRSEYFALMRSAMGAGVIIAFMAMIKITLAKQHMAPLTEAILFSLNYGLGFILIHIL 402 Methylotenera ...
Q1H3U1        307 NVELMALRVTENASRTGEHYITETRSEYFGLMRSAMGAGVIIALMTMLKIIAAKHHYAPLTEAILFSLNYGLGFALIHIL 386 Methylobacillu...
WP_013107824  334 NTRLLSRKVTENAGRVGEHYISTDRTGYRKMYKKAAIGGLFIGFMATLKMLSYHVVLAPIGRAFVNSMIYGLGFVFIHIA 413 Moraxella
WP_012637191  394 HFTVATKQPAMTAARLAAAIEetEK--GTASPGKLADLLIQVGRSQFAAVLGNVGVALPMAILVGWLYAQLLGLPVLSPE 471 Thioalkalivibr...
WP_011766911  394 GGTVATKQPAMTANAIAASVG--EAggKPRDLEGLASVIARTVRSQLAAILGNVGVAIPTAIALALAIQTVSGAPFVDAG 471 Azoarcus olearius
Q5NXJ1        394 GGTVATKQPAMTANAIAASIG--ESqgKNSNLENLVELIARTVRSQLAAILGNIGIAIPMAMLIAIGIHWLTGDPFTEPG 471 Aromatoleum ar...
WP_012585098  395 GGTVATKQPAMTANAIAASIG--EArgKTRDLEALADLIVRTIRSQIGAILGNIGVAIPVAIGVGVLIHFATGSHFISPE 472 Thauera
jgi:Galf_1654 415 HFTIATKQPAMTASAIAASIS---EhgNSHDMENLTSIIAQTMRSQLAAILGNVLVVIPLAMLIAWGIMAATGAHFVAPE 491
WP_015830749  381 HFTVATKQPAMTAAAIAASID--ASdgKSREMDNLVNIIAQTIRSQTIAIIGNVSLAVPVAMLIGWAIYTLTGSHFIPPE 458 Methylovorus g...
WP_015832605  392 HFTVATKQPAMTAAVIAATIDn-ASdgKTKDMHNLVTTVTKTMRSQAVAIFGNVVVAVPMAMLLSWAVFYFSGQHFVSAD 470 Methylotenera ...
WP_013148647  403 HFTVATKQPAMTAAAIAASID--ATdsKSKEMDNLVAMIANTMRSQLVAIFGNVVLVVPIAMLIALGTLHFTGQHFITPE 480 Methylotenera ...
Q1H3U1        387 HFTVATKQPAMTAAAIAASID--ASdrKNKNLDKLVTIIAQTFRSQTIAILGNVMMAVPVAMLVGCLILLVTGQHFITPE 464 Methylobacillu...
WP_013107824  414 KGTVATKQPAMTAAAIASTISg-SSgkKTQQLAKLAELVVDILRTQFIAILGNISVAMPVALLIALAWGYFYDTPMIDGA 492 Moraxella
WP_012637191  472 KAGYQLDKLSPISGLALFHAAIAGVWLFVAGLISGFFDNRSAYLNLPGRLHAHPLLGRILPERTRARFADYIGHNYGALA 551 Thioalkalivibr...
WP_011766911  472 KAARLLEEVDPR-SGALFFAGIAGVCLFLAGLIAGYYDNLSAYNRIPQRLAQLRWAGRWLGPQRLQRVANYVENNLGALA 550 Azoarcus olearius
Q5NXJ1        472 KARELLRQVDPV-SGAVLFAAIAGFCLFLSGLIAGYYDNLSAYERIPQRLLQLRWPRRLFSAARMQRVAAYVENNLGALA 550 Aromatoleum ar...
WP_012585098  473 KAHSLLAEIHPL-GGALFFAAIAGVCLFMSGLIAAYYDNLSAYNRIPQRLTQLRGLRRLLGERRLRKLADYVEQNIGALV 551 Thauera
jgi:Galf_1654 492 KAQHLMADIDPFHSLSVFYAAIAGVCLFLSGLIAGHHDNLAVYNRIPQRLKQLRWLKRLLGAARLARVADYVENNLGALA 571
WP_015830749  459 KAHKLLADIHPWHSGALIYAGIAGVCLFLSGLIAGYHDNLAIYNKIPQRLKALSWLRVLLGPARLERVAKYVENNLGALA 538 Methylovorus g...
WP_015832605  471 KAHQLLRDIHPITSGAFFYAGVAGVCLFLTGLISGYHDNLAIYNNIPQRLKAVPWLQRLLGVERLARVAHYIEHNLGALA 550 Methylotenera ...
WP_013148647  481 KAHHLMADIDPFRSGALLYAAVAGVCLFLSGLIAGYHDNLAIYNKIPQRLRAVTWMQKVLGVTRLNRVANYVENNLGALA 560 Methylotenera ...
Q1H3U1        465 KAHDLLDANDPFHSGAVFYAAVAGVCLFLSGLIAGYHDNLAVYNKIPQRLRALGWLERLLGPSRLDRVARYVENNLGALA 544 Methylobacillu...
WP_013107824  493 QAAHLLHDLDPIRSLALPHAAIAGVFLFVSGLVAGYYDNLAAYNKIGERIRKHWVLMRVMPKRWLDKMSSFVEANLGAIM 572 Moraxella
WP_012637191  552 GNFFFGVLLGTTGYLGYLLSLPLDIQHVAFGSANLGYVAAT---RLDALLALLPYFVFVLLIGAVNLWVSFSLALYIALR 628 Thioalkalivibr...
WP_011766911  551 GNFFFGFLLGGASALGVLFGLPLDIRHIAFSSAYVGYATAAt-dFSLPWATIAYALFGVALIGLVNLAVSFSLTLYVALR 629 Azoarcus olearius
Q5NXJ1        551 ANFFFGFLLGGVTALGVLFGLPLDIRHIAFSSAYVGYAAVGi-dFTLSWQLAALSAAGIALIGLTNLGVSFALTLYVALR 629 Aromatoleum ar...
WP_012585098  552 GNFFFGFLLGGATGLGVLFGLPIDIRHIAFSSAYLGYAAAAl-dFSIPLTTAAIAFAGVLLIGLTNLTVSFALTLSVAMR 630 Thauera
jgi:Galf_1654 572 GNFYFGCMLGGVAAIGVVFGLPVDIRHITFSSAFLGFSLVGl-dFAVEPQQLLVAALGIALIGLANLMVSFTLALSVAMK 650
WP_015830749  539 GNFYFGCLLGGMSGLGVLLGLPIDIRHIAFSSAFVGFSFTAl-dFNITWQLAVIAAVSVLLIGTVNLLVSFSLALYVAMK 617 Methylovorus g...
WP_015832605  551 GNFYFGCMLGGMGSLGVLLGLPIDIRHISFSSAFVGFASFSl-dFMLTWQAAACAALGLALIGLGNLMVSFGLALYVAMK 629 Methylotenera ...
WP_013148647  561 GNFYFGCLLGGMTAIGVLFGLPFDIRHITFSSAYAGYAAVAl-dFMLTWQAVAYIALSLALIGFVNLAVSFSLALYVAMK 639 Methylotenera ...
Q1H3U1        545 GNFYFGCLLGGMSGLGVLLGLPIDIRHIAFASAFTGYSFVAl-dFLFSWQVLVTAILGIWLIGTTNLVVSFSLALYVAMK 623 Methylobacillu...
WP_013107824  573 GNFIFGCFLGSTATVGYMLGLPLDIRHIAFASANFVHGLYYlspEHLTWQVAILSFVGMLLIGMMNLLVSFSLALMVALR 652 Moraxella
WP_012637191  629 ARGTRIGALDRLIKAYLRRIGERPREFLLP 658 Thioalkalivibrio sulfidiphilus
WP_011766911  630 ARGISFAQGRDLVRVLLKHLRTRPRDFFLP 659 Azoarcus olearius
Q5NXJ1        630 ARRITFAQGRELGKMIVRRFVSRPRDFLLP 659 Aromatoleum aromaticum EbN1
WP_012585098  631 ARRITFAQSRSLGGLLLRRLLRTPHAFLFP 660 Thauera
jgi:Galf_1654 651 ARKVTFAHWSTLLRSVGRRFGRKPREFLLP 680
WP_015830749  618 SRKVSFVQWRRFLVTLLKRLNNEPGKFFLP 647 Methylovorus glucosotrophus
WP_015832605  630 SRKVHFSDWRLLLRNLASRLNQHPIEFIFP 659 Methylotenera mobilis
WP_013148647  640 SRKVRFKQWRLLLGNLATRLNQHPGEFIFP 669 Methylotenera versatilis
Q1H3U1        624 SRKVTFAQWRLLLKTLVKRFFQNPGLFLLP 653 Methylobacillus flagellatus KT
WP_013107824  653 SKEVKFTEWKQLYKLVTNHFITRPLDFVWP 682 Moraxella
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