Conserved Protein Domain Family
RPA

?
pfam10134: RPA (This model is not part of the current CDD release)
Replication initiator protein A
Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.
Statistics
?
PSSM-Id: 490928
Aligned: 14 rows
Threshold Bit Score: 236.084
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q6NDW1       122 KDDVNLMDVAPFTLGKNVRQG--VITYEMKD--CLITIEGGAEvGLATVFDYDIFLNMVSYLAEEvrryridDAKGlRP- 196 Rhodopseudomona...
WP_011517539  32 RDSQDLMAFPFFSLAKSRRTA--PIDFRASG--ITIRVEGTQEhGIATIWDADILIWAASQIVEA-------RDAGlRP- 99  Pseudomonadota
WP_011746482  29 RDSRDLMSWPFFSLAKSRRVV--PIDFHMGP--VSIRVEATPEhGMATIWDADILIWAASQIVEA-------RNQGlRT- 96  Paracoccus deni...
WP_012112728  27 RDAQDLMAYPFFSLSKSHRVA--PIDFSAGA--VSIRVEAVPDhGMATIWDADILIWAASQIVEA-------RDAGlRT- 94  Xanthobacter au...
Q2RMM5        46 RDGRSIMDVAVFRLSKKDRRAgdVIRYELPDgyVQVSAGPA---GMASVWDYDLVLMAISHITEAanr--wrAGKGeKP- 119 Rhodospirillum ...
Q2Y578        38 KDDLASMEHPVFSLATKPDTR--TLIYEHRD--VKIQITPSVK-GLATIFDKDLLIFCISQMIAK-------KNRG-EPl 104 Nitrosospira mu...
Q3HKP5        15 KDDMASMEHPVFSLATRPDLR--VLDYAHNG--VRITVTPSVR-GLATLFDKDILIYCVSQLMAA-------LNAG-RAi 81  Rhodobacter sph...
Q28JD0        26 KGDLGTMEHPVFSLATRPDRR--ILTYEHNG--VEITVTPSVK-GRATIFDKDILIFCTSQLMAA-------INAN-RPv 92  Jannaschia sp. ...
Q07GE2        31 KHDLAAMEHPLFSLSTRPDRR--ILNYTHND--AEITITPSVK-GRATIFDADILIFCISQLMAA-------INAG-KKt 97  Roseobacter den...
Q2Y567       150 KDDHATMEAPVFSLKTQKDLT--PWEWTSKDgtKHIEVSPSVKyGRATQHDKDILIFVTSQMTEA-------LNRE-RP- 218 Nitrosospira mu...
Q6NDW1       197 SlppKMYRPTAAHLLKFSRRASGGRQYQEIEAALRRLSKTSI-----TITNLAGGK--RRQVDTrPLIGEHTIIssTN-- 267 Rhodopseudomona...
WP_011517539 100 S---RLMQATPYEILRFIGRGTSLRDYQRLKAALDRLQSTTV-----ATSIRETTG--RRLHRF-SWINEWKEL--ADa- 165 Pseudomonadota
WP_011746482  97 S---RLMAATPYEILTFIRRGDSARSYLRLKAALDRLQSTTV-----ATSIRQPAE--RRRHRF-SWINEWKEL--LDd- 162 Paracoccus deni...
WP_012112728  95 S---RLMMATPYEILTFIGRGTSLRDYRRLKAALDRLQSTTI-----STTLRQTAE--GRRHRF-SWINEWQER--TNh- 160 Xanthobacter au...
Q2RMM5       120 G---RLFRPHISEVLKFCRRDLGGKQKSNLVETCLRLSTTHVamrrsRTT--ESGKvvTVSEGE-SLIS-WYKV--VEs- 189 Rhodospirillum ...
Q2Y578       105 S---QNVRLHAYDLLIWTNRETSGDAYRRLIEAFERLRGTTI-----VTNIKADGE--EITTGF-GLIDSFKVVrhTA-- 171 Nitrosospira mu...
Q3HKP5        82 S---RTLHLTAHDLMTATHRETSGDGYQRLREAFERLAGTRI-----TTNMEVGGR--EITTGF-GLIESWQIVrrSR-- 148 Rhodobacter sph...
Q28JD0        93 S---RTLQLTAHDLLLATGRDRSGDGYKRLRAAFERLAGTRI-----TTNLITGGV--EVTQGF-GLIEAWQIVrrTR-- 159 Jannaschia sp. ...
Q07GE2        98 A---RHLTLTAHDLLLATGRETSGDGYKRLRDAFERLAGTRI-----TTNITTGAQ--ETTSGF-GLIESWEIVrrTR-- 164 Roseobacter den...
Q2Y567       219 DtqsRAVRFTVHNYLVATNKPTGGVEYQRLERALDRLKGTTI-----KTDIKTGNK--RVKEAF-GILDSWAII--ERss 288 Nitrosospira mu...
Q6NDW1       268 -TGKVDQIEIRIPDWVYSSVVrsdKALpLLTLHPDYFLITSGLGRFIYRLARKAAGKDEA--RYSVAELHKRSGSSREPR 344 Rhodopseudomona...
WP_011517539 166 -KGTPLGLELILPDWFYAGVLd--AAL-VLTIDPAYFRLTGGIERWLYRLVRKHGGRQPGgwQFDFQHLYRKSGSVARYY 241 Pseudomonadota
WP_011746482 163 -QRRPLGIELILPDWFYAGVMd--DAL-VLTIDRAYFDLKGGLERWLYRLVRRHGGRQPGgwSFDLRHLHLKSGSLSPFK 238 Paracoccus deni...
WP_012112728 161 -KGRPDGVEMIVPDWFYQAVLd--DAL-ILTIDRTYFDLTGGLERWLYRLVRKHGGRQKDgwRFDFRHLHQKSGSLSPFK 236 Xanthobacter au...
Q2RMM5       190 gNGNPEYLEIEIAKWMYKEVIdgkNPD-VLTVHPDYFLIDLGIGRFIYRLARRAAGKGEArwAF--QTLFERSGSAGSSR 266 Rhodospirillum ...
Q2Y578       172 -TGRMSELEVRISDWMFKIIQ---GSQ-VLTLSRDYFRLRKPIERRIYEIARKHCGEQDEw-RISIELLQKKTGASSHER 245 Nitrosospira mu...
Q3HKP5       149 -GGRMVQVMVTLSEWLFQAVL---TKS-VLTLSRDYFRLRKPLERRIYELARKHCGQQPEw-RVSIATLAKKSGSASPLR 222 Rhodobacter sph...
Q28JD0       160 -NGRMVSVSVTLSEWLYRAAL---TKS-VLTLSRQYFRMRKPLERRIYELARKHCGRQNEw-RVSVDTLLKKSGSASPRR 233 Jannaschia sp. ...
Q07GE2       165 -AGRMVSVSVTLSEWLYRAVL---SKS-VLTLSRDYFSLRKPLERRLYELARKHCGRQPVw-RVSVETLLKKSGSTSPRR 238 Roseobacter den...
Q2Y567       289 sDERMIAVEITLSKWLYNAIH---AHE-VLTIHPDYFRLRKPLERRLYELARKHCGSKQSswKIGLELLREKCGAQSHIR 364 Nitrosospira mu...
Q6NDW1       345 KFLFDLKEFVTRTQtfpMPDFDL 367 Rhodopseudomonas palustris
WP_011517539 242 DFAADLRALVVRQA---LPGYQL 261 Pseudomonadota
WP_011746482 239 RFAFEVRAIVQRQP---LPGYRL 258 Paracoccus denitrificans
WP_012112728 237 RFAFELRDIIRRQP---LPGYTL 256 Xanthobacter autotrophicus
Q2RMM5       267 EFARLLRKVIAAND---LPEYAL 286 Rhodospirillum rubrum ATCC 11170
Q2Y578       246 AFKAMVRELVKCDH---LPDYSV 265 Nitrosospira multiformis ATCC 25196
Q3HKP5       223 VFRKMIRDMIAADS---LPGYSL 242 Rhodobacter sphaeroides 2.4.1
Q28JD0       234 VFRAMLREMIAADA---LPDYHL 253 Jannaschia sp. CCS1
Q07GE2       239 VFRAMLREIITRDP---LPEYTL 258 Roseobacter denitrificans OCh 114
Q2Y567       365 AFRNQVQEISNAHT---LPEYHL 384 Nitrosospira multiformis ATCC 25196
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap