Conserved Protein Domain Family
RPA

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pfam10134: RPA 
Replication initiator protein A
Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.
Statistics
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PSSM-Id: 490928
Aligned: 14 rows
Threshold Bit Score: 236.084
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6NDW1        122 KDDVNLMDVAPFTLGKNVRQG--VITYEMKD--CLITIEGGAEvGLATVFDYDIFLNMVSYLAEEvrryridDAKGlRP- 196 Rhodopseudomon...
1_pfamImport    1 RDSQDLMAFPFFSLAKSRRTA--PIDFRASG--ITIRVEGTQEhGIATIWDADILIWAASQIVEA-------RDAGlRP- 68 
jgi:Pden_0132  29 RDSRDLMSWPFFSLAKSRRVV--PIDFHMGP--VSIRVEATPEhGMATIWDADILIWAASQIVEA-------RNQGlRT- 96 
jgi:Xaut_0710  27 RDAQDLMAYPFFSLSKSHRVA--PIDFSAGA--VSIRVEAVPDhGMATIWDADILIWAASQIVEA-------RDAGlRT- 94 
Q2RMM5         46 RDGRSIMDVAVFRLSKKDRRAgdVIRYELPDgyVQVSAGPA---GMASVWDYDLVLMAISHITEAanr--wrAGKGeKP- 119 Rhodospirillum...
Q2Y578         38 KDDLASMEHPVFSLATKPDTR--TLIYEHRD--VKIQITPSVK-GLATIFDKDLLIFCISQMIAK-------KNRG-EPl 104 Nitrosospira m...
Q3HKP5         15 KDDMASMEHPVFSLATRPDLR--VLDYAHNG--VRITVTPSVR-GLATLFDKDILIYCVSQLMAA-------LNAG-RAi 81  Rhodobacter sp...
Q28JD0         26 KGDLGTMEHPVFSLATRPDRR--ILTYEHNG--VEITVTPSVK-GRATIFDKDILIFCTSQLMAA-------INAN-RPv 92  Jannaschia sp....
Q07GE2         31 KHDLAAMEHPLFSLSTRPDRR--ILNYTHND--AEITITPSVK-GRATIFDADILIFCISQLMAA-------INAG-KKt 97  Roseobacter de...
Q2Y567        150 KDDHATMEAPVFSLKTQKDLT--PWEWTSKDgtKHIEVSPSVKyGRATQHDKDILIFVTSQMTEA-------LNRE-RP- 218 Nitrosospira m...
Q6NDW1        197 SlppKMYRPTAAHLLKFSRRASGGRQYQEIEAALRRLSKTSI-----TITNLAGGK--RRQVDTrPLIGEHTIIssTN-- 267 Rhodopseudomon...
1_pfamImport   69 S---RLMQATPYEILRFIGRGTSLRDYQRLKAALDRLQSTTV-----ATSIRETTG--RRLHRF-SWINEWKEL--ADa- 134
jgi:Pden_0132  97 S---RLMAATPYEILTFIRRGDSARSYLRLKAALDRLQSTTV-----ATSIRQPAE--RRRHRF-SWINEWKEL--LDd- 162
jgi:Xaut_0710  95 S---RLMMATPYEILTFIGRGTSLRDYRRLKAALDRLQSTTI-----STTLRQTAE--GRRHRF-SWINEWQER--TNh- 160
Q2RMM5        120 G---RLFRPHISEVLKFCRRDLGGKQKSNLVETCLRLSTTHVamrrsRTT--ESGKvvTVSEGE-SLIS-WYKV--VEs- 189 Rhodospirillum...
Q2Y578        105 S---QNVRLHAYDLLIWTNRETSGDAYRRLIEAFERLRGTTI-----VTNIKADGE--EITTGF-GLIDSFKVVrhTA-- 171 Nitrosospira m...
Q3HKP5         82 S---RTLHLTAHDLMTATHRETSGDGYQRLREAFERLAGTRI-----TTNMEVGGR--EITTGF-GLIESWQIVrrSR-- 148 Rhodobacter sp...
Q28JD0         93 S---RTLQLTAHDLLLATGRDRSGDGYKRLRAAFERLAGTRI-----TTNLITGGV--EVTQGF-GLIEAWQIVrrTR-- 159 Jannaschia sp....
Q07GE2         98 A---RHLTLTAHDLLLATGRETSGDGYKRLRDAFERLAGTRI-----TTNITTGAQ--ETTSGF-GLIESWEIVrrTR-- 164 Roseobacter de...
Q2Y567        219 DtqsRAVRFTVHNYLVATNKPTGGVEYQRLERALDRLKGTTI-----KTDIKTGNK--RVKEAF-GILDSWAII--ERss 288 Nitrosospira m...
Q6NDW1        268 -TGKVDQIEIRIPDWVYSSVVrsdKALpLLTLHPDYFLITSGLGRFIYRLARKAAGKDEA--RYSVAELHKRSGSSREPR 344 Rhodopseudomon...
1_pfamImport  135 -KGTPLGLELILPDWFYAGVLd--AAL-VLTIDPAYFRLTGGIERWLYRLVRKHGGRQPGgwQFDFQHLYRKSGSVARYY 210
jgi:Pden_0132 163 -QRRPLGIELILPDWFYAGVMd--DAL-VLTIDRAYFDLKGGLERWLYRLVRRHGGRQPGgwSFDLRHLHLKSGSLSPFK 238
jgi:Xaut_0710 161 -KGRPDGVEMIVPDWFYQAVLd--DAL-ILTIDRTYFDLTGGLERWLYRLVRKHGGRQKDgwRFDFRHLHQKSGSLSPFK 236
Q2RMM5        190 gNGNPEYLEIEIAKWMYKEVIdgkNPD-VLTVHPDYFLIDLGIGRFIYRLARRAAGKGEArwAF--QTLFERSGSAGSSR 266 Rhodospirillum...
Q2Y578        172 -TGRMSELEVRISDWMFKIIQ---GSQ-VLTLSRDYFRLRKPIERRIYEIARKHCGEQDEw-RISIELLQKKTGASSHER 245 Nitrosospira m...
Q3HKP5        149 -GGRMVQVMVTLSEWLFQAVL---TKS-VLTLSRDYFRLRKPLERRIYELARKHCGQQPEw-RVSIATLAKKSGSASPLR 222 Rhodobacter sp...
Q28JD0        160 -NGRMVSVSVTLSEWLYRAAL---TKS-VLTLSRQYFRMRKPLERRIYELARKHCGRQNEw-RVSVDTLLKKSGSASPRR 233 Jannaschia sp....
Q07GE2        165 -AGRMVSVSVTLSEWLYRAVL---SKS-VLTLSRDYFSLRKPLERRLYELARKHCGRQPVw-RVSVETLLKKSGSTSPRR 238 Roseobacter de...
Q2Y567        289 sDERMIAVEITLSKWLYNAIH---AHE-VLTIHPDYFRLRKPLERRLYELARKHCGSKQSswKIGLELLREKCGAQSHIR 364 Nitrosospira m...
Q6NDW1        345 KFLFDLKEFVTRTQtfpMPDFDL 367 Rhodopseudomonas palustris
1_pfamImport  211 DFAADLRALVVRQA---LPGYQL 230
jgi:Pden_0132 239 RFAFEVRAIVQRQP---LPGYRL 258
jgi:Xaut_0710 237 RFAFELRDIIRRQP---LPGYTL 256
Q2RMM5        267 EFARLLRKVIAAND---LPEYAL 286 Rhodospirillum rubrum ATCC 11170
Q2Y578        246 AFKAMVRELVKCDH---LPDYSV 265 Nitrosospira multiformis ATCC 25196
Q3HKP5        223 VFRKMIRDMIAADS---LPGYSL 242 Rhodobacter sphaeroides 2.4.1
Q28JD0        234 VFRAMLREMIAADA---LPDYHL 253 Jannaschia sp. CCS1
Q07GE2        239 VFRAMLREIITRDP---LPEYTL 258 Roseobacter denitrificans OCh 114
Q2Y567        365 AFRNQVQEISNAHT---LPEYHL 384 Nitrosospira multiformis ATCC 25196
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