Conserved Protein Domain Family
DNA_pol_B_exo2

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pfam10108: DNA_pol_B_exo2 
Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
This domain is found in various prokaryotic 3'-5' exonucleases and hypothetical proteins.
Statistics
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PSSM-Id: 490909
Aligned: 22 rows
Threshold Bit Score: 197.865
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q0K954            47 SDFLPHYLQRIAAISCV-LRrthrdGSAVF-HVGSL---GTPEDG------EATLIQKFYELIARYSPQLVSWNGGGFDL 115 Cupriavidus...
Q5ZVN1            45 NDFLPHYLQKICAISVV-IS-----HGNQI-KVWSL---GDENSD------EKELITRFFAGIDKHTPTLVSWNGSGFDL 108 Legionella ...
Q6F846            47 MDFQRLALHEIVCISGL-WI-----DEQGF-KLFSF---SQENLS------EKEILTKFLSIFDKRHPTLVSWNGSQFDL 110 Acinetobact...
WP_011715184      54 TPYLKTALCRFISIAAVvRRq----HQDGTiTVTLMslpEEVADTqapyakEDAVLSRFLQGVGEKKPQLVGYNSISADI 129 Magnetococc...
Q8KBU0            54 RPYLKTVMCRVISIAALvRKr---vKDGVTlKLISLpglNVSEQA------EGEIIRQFLEAVGKQKAQIVGFNSSNADL 124 Chlorobacul...
jgi:Anae109_2768  58 SDFLPLPYHRPVAGCLLeAV-----EDGGIvRVADVsawTDRRGD------EASFLAQTWERVAGAA--LVTFHGKGFDL 124
Q7MSB0            43 SSFLPYPFHKIVSIAAViAD-----DYGRFiKVGGFaqeGS----------EKEILGAFLDYLNAKQPKLVSFNGRGFDL 107 Wolinella s...
Q0P9C2            49 SEFLPLPYHKIISICAVlSD-----NFGKFiKVNKI---DGQN--------EKEMIENFFNFIENYEPKLVSFNGKNFDM 112 Campylobact...
Q2GGZ0            51 NPFLRQPFHKVVAISFLkADikkmgEYESF-HLQEIrsgGKIDSV------EKDLLKGFFQYVSSLRPRFVSFNGRTFDF 123 Ehrlichia c...
wsu_vmp:AMF_624   56 NPFLRQPFHKIVTISFLrADirrdlGCEHF-TLREIrsgGTVAST------ERELVRGFLGYLSAIKPRIVTFNGRTFDL 128
Q0K954           116 PVLHYRGLVNGVTAPRYWEMGEGRdddsRDFKWN--NYISRYHMR-HLDLMDLLAMYQ-PRASAPLDDLAKLCGFPGKLG 191 Cupriavidus...
Q5ZVN1           109 PVLHYRSLYHSISAPTYWETGENQ----QTFKWN--NYLSRFHYR-HIDLMDVLAGYQ-NRAFAPLDDISTMLGFPGKMG 180 Legionella ...
Q6F846           111 PVILFRAMYHGLSAPSLFDQGELD----QQKRYN--NYQNRYHHR-HIDLMDVMAMFN-GRNFQKLDDVACVLGLPGKRG 182 Acinetobact...
WP_011715184     130 KAMLQRGIIRGMHQPKFAHRPN--------KPWEgvDYFARGGDW-HVDLKEVVSGW--GQFTPSLHEMATLSGIPGKMD 198 Magnetococc...
Q8KBU0           125 PILYQRALANRVSAPTFCHRPD--------KPWEgvDYFNRYSDF-SIDLKDLVGGY--GKAMPSLHELASSLGIPGKMG 193 Chlorobacul...
jgi:Anae109_2768 125 PVLELRSLKHSVPTPAWFSAGRR------PGAND------------HFDLKELLSAHG-SGGAAPLDLYAKLVGLPGKED 185
Q7MSB0           108 PMLLLRAMKYNLSAYAYFESDNPAl---NKNKWE--NYRQRYSERfHVDLYDTLGHYGaGR-SMRLDLVCAMSGLPGKFD 181 Wolinella s...
Q0P9C2           113 PVLVLRALKYNLKAATYLDTQS--------DKWN--NYKTRFSELkHCDLLESLGSNG---RGIKLDTLCSMVGLPGKYD 179 Campylobact...
Q2GGZ0           124 PVLKYRAMVHGIQAGCLYKIGD---------KWN--NYFQRYSIDwHCDLLDYLSDFG-TSARIKMNEVCSVLNFPGKFG 191 Ehrlichia c...
wsu_vmp:AMF_624  129 PVIKYRAMVHGVQAGYLYNSGD---------KWN--NYFQRYSTDwHCDLLDYLSDFG-TSARVKMHEVCSVLNFPGKIG 196
Q0K954           192 MDGSKVWQAFQAGQLDEIRAYCETDVVNTYLMYCRFQLMRGGMSPREFDIEMEFVQESL--AEL----PGEQ--WMEYLQ 263 Cupriavidus...
Q5ZVN1           181 MSGSKVWEQYQAGQLKEIRDYCETDVLNTYCVYLRFELMRGTISQEGYDRNIAQLKNYLg-AEK----DKMH--LQEFLK 253 Legionella ...
Q6F846           183 ESGYHVPEYVRQAEWLKLTSYCEGDVLNTWLIYLRWLLLKGQMSLDDHYHWIQTTIGYLhqQPQ----------QNEFLS 252 Acinetobact...
WP_011715184     199 VAGDQVPQMWLDGRLADIVAYNEFDALTTYLLWLRMVHFSGHFDGATYQNEQNLVRALIerEGA----QKPH--LLAYLQ 272 Magnetococc...
Q8KBU0           194 IDGADVIDLWRSGDIRKIVEYNQFDALSTYLVWLRTAYFSGMLTEDEFVQEEHKLETLLlqEIEs---GSEH--LALFLD 268 Chlorobacul...
jgi:Anae109_2768 186 VAGEDVQALYATGALDRIAAYCMTDVVQTFLLFLRYRLLEGSLSPDGYAESAALARAALpsLFRrrlpLGEHaaLDGFLE 265
Q7MSB0           182 VHGDEVYRLYFEGKRGEIDEYCQSDVLNTYWLYLKYELLAGNLTLEDY---YATLAEFMhkIPQ----GRSY--SEIFLQ 252 Wolinella s...
Q0P9C2           180 VHGDEVMKLFYENKLEKIHEYCESDVLNTYMLFLKYELIKANVDEEDYVGFLSYMRDFLcaKKS----DRSY--TEVFAK 253 Campylobact...
Q2GGZ0           192 LDGSKVTALYDSGKISEIRDYCETDVINTYLVYLRMMHYQDRITTLSYNDSINDLLSYL--DSS----GREH--FKQFRI 263 Ehrlichia c...
wsu_vmp:AMF_624  197 IDGSEVARMYDCGQLSEIRDYCESDVINTYLVYLRLMHHQGRVTSDSYNECIKDLLEYL--QTS----GNKH--MLEFVA 268
Q0K954           264 AF 265 Cupriavidus necator H16
Q5ZVN1           254 Km 255 Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Q6F846           253 VW 254 Acinetobacter baylyi
WP_011715184     273 QW 274 Magnetococcus marinus
Q8KBU0           269 AW 270 Chlorobaculum tepidum
jgi:Anae109_2768 266 RC 267
Q7MSB0           253 YA 254 Wolinella succinogenes
Q0P9C2           254 AC 255 Campylobacter jejuni
Q2GGZ0           264 EW 265 Ehrlichia chaffeensis str. Arkansas
wsu_vmp:AMF_624  269 EW 270
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