3EU8


Conserved Protein Domain Family
Glycoamylase

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pfam10091: Glycoamylase (This model is not part of the current CDD release)
Putative glucoamylase
The structure of the Bacteroides fragilis member (pdb:3eu8) as an alpha/alpha toroid fold and is similar structurally to a number of glucoamylases. Most of these structural homologues are glucoamylases, involved in breaking down complex sugars (e.g. starch). The biologically relevant state is likely to be monomeric. The putative active site is located at the centre of the toroid with a well defined large cavity.
Statistics
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PSSM-Id: 519177
Aligned: 16 rows
Threshold Bit Score: 217.622
Created: 15-Feb-2025
Updated: 25-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3EU8_A        196 NFPVHGYNECLIXYILAAASPTHGVPAAVYHeG-W-AqngAIVSPHKVEGIELHLRYq-gGeagPLFWAQYSFLGLDPVG 272 Bacteroides fr...
Q5FT68        248 PSDWKGYNEGLIIYLQALGSPTHPLPAETWK-A-WtA---TYENQWGDFQGHKLLNF---A---PMFGHQYSESWIDFRG 316 Gluconobacter ...
Q8P8N3        243 dHDWMGYNEAMMLYILALGSPTHGVEPDAWT-V-W-Tr--tYNNDWGVYQGQEYLSF---G---PMFGHQYSHVWIDFRD 311 Xanthomonas ca...
jgi:Acry_3133 179 HYGWEGYNEAALLYVLGLGSPTFPLTPAGYV-T-W-----QLTYQWENLLDRDVLYS---G---PLFTHLFSHAWIDFRG 245
jgi:Pnap_4503 190 PYRWSGYDEATLLYVLGLGSPTHPLSAESYA-A-W-----TSTYEWKTIYGHELLYG---G---PLFIHQYSHIWLDLRG 256
Q21ZB9        180 AYRWEGYDEALVLYILGLGSPTHPLPQSSYA-A-W-----ASTYEWKNSYGYDYLYA---G---PLFTHQISHLWIDFRG 246 Rhodoferax fer...
Q7UQD9        213 PYQWDRFSELTILVLLAIGAPSSAIPPSCWN-A-W------RRENVLHHQGESFVSY---P---PLFVHQYPQAFFDFRG 278 Pirellula sp.
WP_011993439  166 GH-WDKYAEQLMMYFLGVASPTYPVEPSVYW-S--------FQRDIGNYKDYELIYTy-tG---SLFTYQFSHAWIDFRK 231 Fervidobacteri...
WP_012259697  179 isvWDMAAEQKMIYLQAALHLDPTTARALYR-G--------FRRDKGDYRGQSIIINp-gG---TLFAYQYTEAWLDVRT 245 Chloroflexus
Q2RP49        188 NHEIRGWNECLIAYVLAAGSPTHPIKPAVYH-QgF-AagrDFRNGRVFEGIELPLGPeggG---PLFFTQYSFCGLDPRG 262 Rhodospirillum...
3EU8_A        273 LKDEY----CPSYFNEXRNLTLVNREY----CIRNPKHYKGYGPDCWGLTASYSVD--------------GYAAHGPLER 330 Bacteroides fr...
Q5FT68        317 VQDAWdrahNVDYFQNGREAAYAQRAY----AQANPGDWKDYGPNIWGLTACDGPGdaqqvydgkkrhylAYSARGAGRD 392 Gluconobacter ...
Q8P8N3        312 IQDQYmrerGIDYFLNSRRATLAQRDY----AIDNPMKWKDYGENVWGLTAGDGPQntsqeyrgeqrqfrHYSSRGAGLR 387 Xanthomonas ca...
jgi:Acry_3133 246 IRDEFmrekASDYFENTKSAIAVHREY----AERNPYGFEAYGRDFWGVTAGDGPTapemlengkdcrffGYMSRGVPYG 321
jgi:Pnap_4503 257 IQDVFardkGIDYCENSRRATYVQREY----AIRNPLDFAGYGENFWGLTASDGPGsttrrikgiersffDYVARGAPYG 332
Q21ZB9        247 IQDAFmrekGIDYFENTRRATYVQQQY----AIDNPLKFAGYGKHCWGITASDGPGpetvkvkgierhflDYVGRGVPYG 322 Rhodoferax fer...
Q7UQD9        279 VVSSD----GRNYWRNSQLAHLAQIEFqqslADQSPKRFGHYGEDLWGLTSSDSSN--------------GYRDWGGPYE 340 Pirellula sp.
WP_011993439  232 ITDKS----GVNWFENSVKASLANWEY----CKEMHDKYKTLHEYSWGLTACDSPS--------------GYRGDFGAPP 289 Fervidobacteri...
WP_012259697  246 YRDPD----GVDWFTNTRLASMANRDY----CVSLHERFRTYHANSWGIGCGDTPR--------------GYVVAGAPPA 303 Chloroflexus
Q2RP49        263 LADRY----A-DYWEQNRRHTLINYRY----CQRNPLGHKGYGAACWGLTASDDPD--------------GYAAHAP--T 317 Rhodospirillum...
3EU8_A        331 D--------DRGVISPTAALSSIVYTPDQSLQVXHHLY-EXGDKVFGPYGFYDAFSE-TA-------------D--WYPK 385 Bacteroides fr...
Q5FT68        393 Yi------lDDGTIAPTAVGGSIAFAPEIALPALKEMRaRYGDRIYNKYGFLDAFNP-SFad----------qKsyWVDG 455 Gluconobacter ...
Q8P8N3        388 En------fDDGTIAPTAAISSIVFAPEVVIPATEEMHkRYGDFLYSSYGFLDSFNP-SFnydiplktgrmvpDrgWVAS 460 Xanthomonas ca...
jgi:Acry_3133 322 P--------DDGTIAPWAMLATLPFGADAALAGTRGLL-ELHPKVCHQDRFSSGFNP-TLsd----------gDggWLST 381
jgi:Pnap_4503 333 P--------DDGTVAPWAVAASLPFAPEIVLPTLQHFQ-DVYPQVTGEYCFRCSFNL-SFsdea-----esdgHvgWTSP 397
Q21ZB9        323 P--------DDGTIAPWAVVASLPFAPEIVLPAIDFLVhEVELKTGNPCGFKATFNP-TYphk-------rsnPhgWVSP 386 Rhodoferax fer...
Q7UQD9        341 DgqaqpdrgIDGTVVPSAAGGGLAIAPEQTMRTLQYQKnTFGESVYGRYGFVNAFNP-RRg---------------WIGS 404 Pirellula sp.
WP_011993439  290 SannntqhyVDGTVPPCGALGSIVFVPEIVEETVRYYY-EKVPQLWGKYGFKDAYNLdKn----------------WTSE 352 Fervidobacteri...
WP_012259697  304 Lip----pePDGTVSISNATACLPFIPDDVLAMLDYLY-REHPQSYGRYGFYDAYNL-DT-------------VpaWYSH 364 Chloroflexus
Q2RP49        318 N--------DTGVISPTAALSAFPYAPNEAMAALRHFSgPLRDQLWGRFGFVDAFCP-SRd---------------WTAE 373 Rhodospirillum...
3EU8_A        386 RYLAIDQGPIAVXIENYRTGLLWKLFXSHP 415 Bacteroides fragilis NCTC 9343
Q5FT68        456 QQLGIDQGPILLMLENWRSGLVWNTMKKNA 485 Gluconobacter oxydans
Q8P8N3        461 DYIAIDQGPILAMIANYQNEFVWNVMKKNa 490 Xanthomonas campestris pv. campestris
jgi:Acry_3133 382 GWYGLDQGLLVMMIENHRTDMIWEIMRHCS 411
jgi:Pnap_4503 398 YHFGINLGPVVLMCENYRSGLLWRLMRACP 427
Q21ZB9        387 WHYGLNQGPIVLMIENYRTGLLWRLMRDSS 416 Rhodoferax ferrireducens T118
Q7UQD9        405 DVIGIDTGITLLSASNLLEEGVWQPFMQHP 434 Pirellula sp.
WP_011993439  353 VYIGIDKGIELLMIENYLSGLIWDIVMKSE 382 Fervidobacterium nodosum
WP_012259697  365 TIYGINKGCALLMLENACTGLIWDIYTNSP 394 Chloroflexus
Q2RP49        374 TFLAIDQGPVVAMIENFRSGLLWRLFMAIP 403 Rhodospirillum rubrum ATCC 11170
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