Conserved Protein Domain Family
Phage_cement_2

?
pfam09956: Phage_cement_2 
Phage cement protein
This entry represents a large family of phage proteins. These proteins form a trimeric arrangement which stabilises the phage capsid. The proteins have what is known as a beta-tulip fold.
Statistics
?
PSSM-Id: 490778
Aligned: 80 rows
Threshold Bit Score: 36.1213
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_052063976      2 GRQSLvNLSLTLkaTTAITQHRGVGFDgaqasaq---------gqkvlgVAh--F-DAVIGDE--VTVDVD-D-TVl--- 62  Acidihalobac...
WP_012415121      8 IDNGRkSGELVCh-----TAGAEIFLGallchdgagavvpaatglvfagIAdgyA---KEGEP--VKVWKt-G-VFerp- 74  Elusimicrobi...
WP_013779727      5 VSNGK-SIKATSp--eTVAQGEFVLINni------------------fgLAles---aaGGEQ----V------VLdieq 50  Mahella aust...
WP_012063701     20 ISDGK-GLQVTVpeNTTVVAQTFVLLDgf------------------fgVAmesa-kteAGET--TAI------GLnieq 71  Alkaliphilus...
WP_013780209      5 VSDGL-SVRVTVpaSTVVEQGKFYVLDgf------------------fgMAiqsv-ttgAGET--APV------ILnieq 56  Mahella aust...
WP_013554719      5 ARITQqADRVQMtlNTDVAVGDMVAIGadria-------------vagtTA-------LAGEEnvYYV----GdVVv--- 57  Nitratifract...
WP_013677815      5 IPIFKpGDDITMtaGAAINAGELCYVSaantvqkta-----aavedwlgVA---TtDAPSG----GKVGITsGgVQe--- 69  Pseudonocard...
REF_PBI:DNAM5_5   5 APHYFpADRLTMtaSASTTAGQVVRVsgnksvapv-----saaasgvlgVA---AhDAASGAP--VVVYTE-G-VFe--- 69 
WP_012940886      2 VEVYPeGKYLPLtaGADITAGQVVELtgdktvapt-----ggasskvigVA---LiNANAGEN--VTIVTE-G-VVe--- 66  Archaeoglobu...
WP_012675565      4 YERDDrVLVKNTg-TSDITANSLVKIGnw------------------vgVAy--T-DIPAGQE--GIIMTr-G-VFel-- 55  Persephonella
WP_052063976     63 -------vEAGA--AI--A-IGDALIMDAQGRAipstge------igvaagATavTSSAAngailtggimpeyvfADALE 124 Acidihalobac...
WP_012415121     75 -----------staAIavSnIGTPVAFDSDDKV----------------------KATTG---------------GTDAC 106 Elusimicrobi...
WP_013779727     51 aeyetnqvAAGV--TF--K-VGDAVYFDATEKVl-----------------TNtdGAGANrl------------vGRATQ 96  Mahella aust...
WP_012063701     72 aeyetdqiTAAD--AF--N-KGDLVYYKASTKKlt---------------tNPgtEETPNrl------------vGKVTN 119 Alkaliphilus...
WP_013780209     57 aeyetsqiTTAD--AF--S-KGDKVYWNASTKLltt------------qanADasGNPQNrp------------vGRVTV 107 Mahella aust...
WP_013554719     58 --------EATAseAI--A-VGDTVYLTSDGKIs--------------------kTADGNtr------------aGFAVS 94  Nitratifract...
WP_013677815     70 -------lAVAA--AV--V-AGDVLISAANGRV------------------TPiaSETNYar-----------vvGIALT 108 Pseudonocard...
REF_PBI:DNAM5_5  70 -------vAASG--AI--A-AGSAVVGATGGGVaaf------------ddeTHtgDQIA----------------GTALA 109
WP_012940886     67 -------vVAAG--AI--A-AGDKVQSAAGGKVakfsatktytdsagntvdVDdaTKII----------------GIALT 118 Archaeoglobu...
WP_012675565     56 -------pVADPtvAI--A-SGDLLQYDGNGGV------------------KPydSADTTnp-----------kiGKAFA 96  Persephonella
WP_052063976    125 AATAAGQiiEVITRR 139 Acidihalobacter prosperus
WP_012415121    107 GILEDVKdtTNAIRI 121 Elusimicrobium minutum
WP_013779727     97 ASDANGVvwFILAPQ 111 Mahella australiensis
WP_012063701    120 KKDASNVihFILLPQ 134 Alkaliphilus metalliredigens
WP_013780209    108 AKDANNViwFVLGPQ 122 Mahella australiensis
WP_013554719     95 AAAAAGDsvSFVLNG 109 Nitratifractor salsuginis
WP_013677815    109 AQSTTGQkcRVKMAR 123 Pseudonocardia dioxanivorans
REF_PBI:DNAM5_5 110 AAADSKV----LIKL 120
WP_012940886    119 SASADGDkiLVKLTL 133 Archaeoglobus profundus
WP_012675565     97 GKAAGET--KVLVTL 109 Persephonella
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap