3DEE


Conserved Protein Domain Family
DUF2063

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pfam09836: DUF2063 (This model is not part of the current CDD release)
Putative DNA-binding domain
This family represents the N-terminal part of a Neisseria protein, UniProtKB:Q5F5I0, Structure 3dee. It runs from residues 31-117 as a helical bundle with 4 main helices. \From genomic context and the fold of the C-terminal part, it is suggested that this protein is involved in transcriptional regulation.
Statistics
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PSSM-Id: 490675
Aligned: 121 rows
Threshold Bit Score: 56.4626
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3DEE_A        10 YQHRFSQAIRggeaad---glpqdRLNVYIRLIRNNIHSFIDRCYTETRQYFDSKEWSRLKEGFVRDARAQTPYFQEIPG 86  Neisseria gonor...
WP_008584485  10 YQSALANYCRtgmleni-pgvvkeNVPQYRRLVLNVIDDMLQNAYPLTYDLLEEAEWNAIVHDFFTNHPCQSPQVWYMPK 88  Niabella soli
WP_011586442  10 YQRMLASYTRtgietai-pgtkeeGIMRYRTMIYTIVNESLSTSYPLTRQLLTAQEWDDTVHRYFSTHACTSPYLWRMPL 88  Cytophaga hutch...
Q9HWS3         8 QQFSLARHLRdplgnapppdieerRLRVYRELFYNAIEGLLASGFPRLRGLLGEQQWHGLVREFYREERSHTPLFTRIAG 87  Pseudomonas aer...
WP_013534609  10 QQYAFAAHLRdpaghppppgiegrRMAVYRRLFLNNIANLLGNGFPVIRRILGEDAWMGLVRRFYANHRSRSPLFPEIGR 89  Pseudoxanthomon...
WP_012916483   8 QQLALTLHLRdpqrhappadiephRLAVYRALFFDNLAQLLSAQFPVLHATLGATDWDVLLRAFCAEHRARTPLFPRLGG 87  Xanthomonas alb...
WP_005224287   7 HQQAFCAHLRdperadaptdvapeRMRVYRELIFNNLDSLLAGSFPVLHRILKSAHWHALVRAFLVEHRARTPLFHRLPG 86  Marichromatium ...
WP_009207640  10 FQRAFARHIRdprhaprpdgvparRMAVYNELLLNNVCGFLDTCFPVCRTLLGEARWRRLNRTFFRDWPSHTPWFREISR 89  Sulfuricella de...
WP_011766581  10 FQHDFGRRLRdpghaplpagldrrRTGAYETLLFDKLCGVIDRCFPVARATLGEARWRRLCRAFVRDWRCSTPWFRAIPR 89  Azoarcus olearius
Q2Y5Y3        10 FQYAFTAHLRdprakpvpsgldarRMGIYSRLVYENLDSFLLRCFPVTRDVLGPRRWSRLVRAFLIAHRSRSPLFHQIAG 89  Nitrosospira mu...
3DEE_A        87 EFLQ 90  Neisseria gonorrhoeae FA 1090
WP_008584485  89 EFYQ 92  Niabella soli
WP_011586442  89 EFYE 92  Cytophaga hutchinsonii
Q9HWS3        88 VFVD 91  Pseudomonas aeruginosa
WP_013534609  90 EFVR 93  Pseudoxanthomonas suwonensis
WP_012916483  88 ELVR 91  Xanthomonas albilineans
WP_005224287  87 EFVD 90  Marichromatium purpuratum
WP_009207640  90 EFVR 93  Sulfuricella denitrificans
WP_011766581  90 EFVD 93  Azoarcus olearius
Q2Y5Y3        90 EFIE 93  Nitrosospira multiformis ATCC 25196
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