4N77,4F3M


Conserved Protein Domain Family
Cas_Cas5d

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pfam09704: Cas_Cas5d (This model is not part of the current CDD release)
CRISPR-associated protein (Cas_Cas5)
CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum.
Statistics
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PSSM-Id: 519004
Aligned: 39 rows
Threshold Bit Score: 78.2551
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4N77_A         3 TLLIRLQGplqSWGTRSRFDHRD----TWPYPTKSGVVGLLAAAL----GRDRRED------------VSD--LA-ALRm 59  Thermus thermop...
Q8ZZL1         3 ILLVKLRLplfSIKHYETYQVAA----TLPFIPPSTVVGALVQAAa--rGGLCEGDclaevrgwiykaRDV--AApTVKf 74  Pyrobaculum aer...
WP_011821818   5 MLVSKVEL---AWGFSVRYAGASaaqpALPIPPPTTIVGFYAEPLarllGLAEYRGfpakrpcspaalLAEhtLAaSAGl 81  Hyperthermus bu...
Q1H3R5         4 GVRLHVWGdyaCFTRPEMKVERV----SYDVMTPSAARGILTAIH----------------------------WKpAIRw 51  Methylobacillus...
Q7NYP8        13 GIRIHVWGaraCFTRPEMKVERV----SYDVITPSAARGILEAVH----------------------------WKpAIRw 60  Chromobacterium...
Q2SID2         4 GIRLLVWGeraCFTRPEMKVERV----SYDVITPSAARGIIEAIH----------------------------WKpAIRw 51  Hahella chejuen...
Q60B28         3 DICLKVFGdyaCFTRPEMKVERV----SYDIITPSAARAIFEAIL----------------------------WKpAIRw 50  Methylococcus c...
Q9X2C0         3 VLVFDVSApyaLFRRPYTTTSSY----TLPFPPRTTLLGLVGCVL----GYSTPER------------------LdSAKv 56  Thermotoga mari...
O27159         3 TLAVEIFQpfaQFRNPFTFDYAQ----TYPLSPKSTVTGMLQNAT----GRYYDQD------------------IsEISv 56  Methanothermoba...
WP_011838626   3 AYKLRIEF---LWGHQSRIVGLSktnpSYYYPPPTTILGAIAEPI----AKEYKLGensasvrkllasLSAnlLAlGLK- 74  Staphylothermus...
4N77_A        60 gv-----------rvDRKGVL--KVDY-------QTAQfvyrtegyvavstpkerewlsryTKTPIRVDERNATVTSKRY 119 Thermus thermop...
Q8ZZL1        75 pv-----------vlKRARGVleEGKL----------------------------------PLSGEELGGYFDAMVREYA 109 Pyrobaculum aer...
WP_011821818  82 n-------------sDSRSGLvvHSDL-------SHVAtlp-----------------yqrRRKTGWEKLAFAAQAVGAA 124 Hyperthermus bu...
Q1H3R5        52 vvdsihvlkpirfesIRRNEVgsKASA-------SKASggmargs---------vegiytlIEE--DRQQRASTVLRDVA 113 Methylobacillus...
Q7NYP8        61 vvdrigvlkpirfesIRRNEVgsKLSA-------AGVAkamkagr---------vdglamlVDD--DRQQRAATVLRDVG 122 Chromobacterium...
Q2SID2        52 vidrihvlnpirfesIRRNEVggKLSA-------RNVAkamkagr---------vdgvaffVEE--DRQQRAATVLRDVA 113 Hahella chejuen...
Q60B28        51 rvtkievlkpirwisVRRNEVgaVASV-------RTAQtamqagr----------gdlglyIEE--ERQQRAGLFLREVA 111 Methylococcus c...
Q9X2C0        57 av-----------qiKNPLKFlrTGT--------NFVE--------------------------TKKDKKASKRTRISLQ 91  Thermotoga mari...
O27159        57 si-----------hgLFESTFwnYQSFivgdialKYHHnklk---------------lwnkGYPLYSVNKKSQRSPSYQQ 110 Methanothermoba...
WP_011838626  75 ---------------PVNVLPikYMDI-------NRILavkltgktlgkknvvlpypnpkdLDRSFDAPARGKTIFAPLD 132 Staphylothermus...
4N77_A       120 FLSDAAFLVGLEGERA-----LLEALHRALKNPRFPLY--LGRKSY-VPSPPPYLpd-gLVEAPLA-------EALEGYP 183 Thermus thermop...
Q8ZZL1       110 YVAEKAVLVVPSAEAH----------IGRLEKALWLLEr-VGDTESyVSVRGVEVln-aRPCGAGE-------VDVAVKL 170 Pyrobaculum aer...
WP_011821818 125 YGPAARLYLALVVDVEglsrkLGETVESIISALAWAGWr-LGSKEGlVSVIHAEAvepvTLTGGVFetilyqeGGLVEPF 203 Hyperthermus bu...
Q1H3R5       114 YVIEAHFELTELAGEGdnpgkHLDIFNRRARRGQCHHQpcMGVREFpAFFSLIEP----EMALPASil----sDEQKSRD 185 Methylobacillus...
Q7NYP8       123 YVIEAHFELTGKAGADdsvgkHLDTFKRRARKGQHFHApcLGTREFaASLELVDD----GEAGPQPd-----tSLAGARD 193 Chromobacterium...
Q2SID2       114 YVIDAHFELTEKAGVDdsegkHLDIFNRRARKGQYFHApcLGVREFpAYFRLLDA----DESPPQPh-----tSLEGEVD 184 Hahella chejuen...
Q60B28       112 YRLHARCEPTDRKGEQespdkFLAMFHRRATNGQCFNQpyLGCREFaAHFEPVTNld-aAMADEPP--------ITETRD 182 Methylococcus c...
Q9X2C0        92 LLKNPAYRVFFSWEDE-----DFERLKNLLEHSETIFTpyLGVASFiARLNYVGKye-aTRVADFPcevhtvvpnt---- 161 Thermotoga mari...
O27159       111 ELFNGHYYIFLRGDDD-----IIEEVCDSLRKPTKPLS--LGRSEDiIFIRGIHRdfevIEREVKKnlwmtypTYIKLSN 183 Methanothermoba...
WP_011838626 133 FDPPKIDILIVFKENQi---yVDRVKVDLDVDLLWDIHr-IGSKESiVSVMDVKEsr-kINIERGI-------SITDYSF 200 Staphylothermus...
4N77_A       184 YLLGGKPped------------------llL-----ALEAEEGRLVYDQPA-----G-PFS---ERRFAARFVR 225 Thermus thermophilus HB8
Q8ZZL1       171 AKVAGGahl------------------------vvrAGDEDGTLSDFAVPLatggkGyYTP---TKIAVKSDVF 217 Pyrobaculum aerophilum
WP_011821818 204 SKVELIrdiym---------------wrldPkl-lcGGEAIPDYILYHIPAaasstSsILLpppSTELPGFSPR 261 Hyperthermus butylicus
Q1H3R5       186 lgwm---------------------------------lhdiDF--DHGATP-----RfFRA---ALVNGVMSVP 216 Methylobacillus flage...
Q7NYP8       194 lgwm---------------------------------lhdiDF--ADGMAP-----RfFRA---EMRDGWIAVP 224 Chromobacterium viola...
Q2SID2       185 lgwm---------------------------------lhdiDF--VNGMTP-----RfFRA---RMVNGVIEAP 215 Hahella chejuensis KC...
Q60B28       183 lgwm----------------------lhdiD-----F--------ANGIQP-----KfFRA---HMQQGVIRVP 213 Methylococcus capsulatus
Q9X2C0       162 --------------------vkllpepshyLifervTRKMDKERNMLESAVyifkrDlSPV---KVEGGEVWRV 212 Thermotoga maritima
O27159       184 GKTHFPIrnerfpvysi----pervifrngEsi--iSNKAEIGESTERIPT-------FQT---VIYTGMNQVI 241 Methanothermobacter t...
WP_011838626 201 PLDRGIKvldiidkgwiyetyinpyklkeeNks-ilDHYLSSNLLLYMVPIkltisSePSV---KIIVQEPFAI 270 Staphylothermus marinus
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