Conserved Protein Domain Family
Plasmid_RAQPRD

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pfam09686: Plasmid_RAQPRD (490549 is an unknown moldel)
Plasmid protein of unknown function (Plasmid_RAQPRD)
This entry identifies a family of proteins, which are about 100 amino acids in length, including a predicted signal sequence and a perfectly conserved motif RAQPRD towards the C-terminus. Members are found in the Pseudomonas putida TOL plasmid pWW0 and in cryptic plasmid regions of Salmonella enterica subsp. enterica serovar Typhi and Pseudomonas syringae DC3000. The function of these proteins are unknown.
Statistics
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PSSM-Id: 490549
Aligned: 15 rows
Threshold Bit Score: 60.4578
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q7N7N8         5 VLA-GEKDELATTLKQLDQVQASLERARVLAIQEg--qADRFYFDYLRANRDLNIVREGINRYLTPSRAQPGISAAaldV 81  Photorhabdus la...
Q6D9Q1        22 ASA-SEKDELASTQRLLDQVQASLERARVVAAQSdpadRARYHFDYQRITADLNAIRAGIDTYLAPSRAQPREASS---I 97  Pectobacterium ...
Q888Z4        38 GTA-SEQANVEVMIRQLNALEAVAQRSVDLPQDP----AQRYHLDYPRLVSDIARIRQGLQDYLSPSRAQPRDPVE---L 109 Pseudomonas syr...
CBL45398      57 PAAeMERAKLAEIVSALDQLVVQVDDASKTGASG------RVRFNYDALRRDLLGRRALIQRYVNGAWDEAHDLPP---L 127
Q3JD95        23 ADAdAEREVLAKIIHELNALDPLIKRTEANADQD-----SHIRLRYDWLHQDLKQIRDGIQSHINFPRAQPRSFLP---L 94  Nitrosococcus o...
Q3JDD7        23 ADAdAEREALAKIIHELNALETLINRAEVNADRD-----SRIRFRYDWLRQDLKQIKDGIQSHIDSPRAQPRSFPP---L 94  Nitrosococcus o...
WP_014148568  23 ADSdAERTALAKIKHEIESLKPLIAEAKAQADSD-----ARVQFQYDWLALDLDRMVLGIQEHLSAPSTQPRSFPP---L 94  Methylotuvimicr...
WP_013818676  20 ADLdGERTALAKLMHELDGLKPLIAEAQGQADQS-----GRLQFQYDWLRLDIERIKLGIQEHLTAPR-QARSFPP---L 90  Methylomonas me...
WP_025282644  21 vsPdAERAHLAQLASELASLESLIDEAERHADPD-----ARIRFQYLWLRQDLDRVKQGIREHLQAPRAEPRQVPP---L 92  Ectothiorhodosp...
Q7VMN4        23 AQA-TEQEQLEQAIKQMDAAKLSLQRAAQQAKTSv---KSREFFDYTAAQRDITTVQEGIKQYINPSRAIPRNPKAvraL 98  [Haemophilus] d...
Q7N7N8        82 TGQY 85  Photorhabdus laumondii subsp. laumondii
Q6D9Q1        98 AGNY 101 Pectobacterium atrosepticum
Q888Z4       110 SGHY 113 Pseudomonas syringae pv. tomato
CBL45398     128 Akty 131
Q3JD95        95 RGDY 98  Nitrosococcus oceani ATCC 19707
Q3JDD7        95 RGDY 98  Nitrosococcus oceani ATCC 19707
WP_014148568  95 KGDY 98  Methylotuvimicrobium alcaliphilum
WP_013818676  91 KGDY 94  Methylomonas methanica
WP_025282644  93 RGDY 96  Ectothiorhodospira haloalkaliphila
Q7VMN4        99 TEDY 102 [Haemophilus] ducreyi
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