Conserved Protein Domain Family
TraV

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pfam09676: TraV 
Type IV conjugative transfer system lipoprotein (TraV)
This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK. The alignment contains three conserved cysteines in the N-terminal half.
Statistics
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PSSM-Id: 401566
View PSSM: pfam09676
Aligned: 24 rows
Threshold Bit Score: 100.618
Threshold Setting Gi: 123771614
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
wugsc:KPN_pKPN4p07132  24 TEFQC-NATTSDTCMTMEQANEKAKLKEERSDAKPAAAGLPQLaeg--------nfrTTS---VNSYPLPPQSNLTQARV 91  Klebsi...
WP_012732830           34 SSFAC-KAPAGVLCNSMSGIYANAMAHNLPDQRVHAGSGA-----------------ATNltlGSYADDSPADRASGSRK 95  Burkho...
WP_011804809           30 SKYAC-AAPEGVACDSVSGTYTNALHNNLPSQQASAFRSE------------------------SREGVPQEPAASPVRQ 84  Acidov...
Q47CP9                 30 SKYAC-KAPDGVACDSVSGTYANALHNNLPSQQA------------------------------QRSARRQKETSEENAS 78  Dechlo...
BAN51543               27 DEYACkGMPNGVTCMSAKDVYSATE---------------------------------GDdykTQLKKEQEGGTASSDKP 73  Pseudo...
calssnu:BYI23_E003290  28 DSFSCpGMPQGIICKTPMAVYKSTNHMPAPTDNDTPYGPNVKQvgvk------fgddQGNvvrPELAASAASSLPGLTPV 101 Burkho...
jgi:Mpe_B0369          31 DEYGCtPGEAKVTCRTPTAIYRSTNGSPPVAETDSPVAWSKLIr-------------GTSgalVEEQPDAAAPIPGVARS 97  Methyl...
Q5NX54                 30 S--SCpGIGPG-ACASPGDVYAITSGSIDEFEERIANHTTENK--------------IDVdavIRKQKEGERLPSVISST 92  Aromat...
Q3IUW5                 27 KDFLC-PAQEGIACATISEADVGSGSA------------------------------VTPvreTFSDTLGKEMSQSPLGV 75  Rhodob...
CAX53649               22 SDFDC-NKTATDQCLSMSDASRLAAKGKSLDDLTAEAQASPKPageslatlpnsrpaASPdrkISTATLASRPVITPPAV 100 Erwini...
wugsc:KPN_pKPN4p07132  92 AAEkdraravylnnptakneatyfetekrlqslpvvkmslPVVASTFTSPSTppgn--------yprPLRKGEETTSLWI 163 Klebsi...
WP_012732830           96 AAAgg---------------------------------------arATSPGIlpral------dsgaPVRTAPRELRVWF 130 Burkho...
WP_011804809           85 PIAaapr-----------------------------smadGDAEG---TPAL---------------ALRSQARVLRLWT 117 Acidov...
Q47CP9                 79 PTAgrpi-----------------------------slatANLSGMAITPS----------------PLRTQARILRLWI 113 Dechlo...
BAN51543               74 STGnatr------------------------------vliAEGSDNAPVPMRarn----------plPIRSQAVVMRIAI 113 Pseudo...
calssnu:BYI23_E003290 102 SATas------------------------------------------------------------arPVRTPAQVMRIWI 121 Burkho...
jgi:Mpe_B0369          98 DASgg----------------------------------eRRTPNERSVPGLnaqtlglvgatiggrPVREPAQVMRIWI 143 Methyl...
Q5NX54                 93 ----------------------------------------ATSSSVGTMPPElaihs------dgvaPVRMPAQVMRIRV 126 Aromat...
Q3IUW5                 76 GSGkggkl----------------------------tvvsQSSMGDGGAPYRa-------------qQYRVPEEVGTLWI 114 Rhodob...
CAX53649              101 SSSnalra----------------------------syipVRAQAAPVTPGEyasa-------grvnALRIPDATQRLWI 145 Erwini...
wugsc:KPN_pKPN4p07132 164 APYVDSDDVYHQPATVLFVVKPSAW 188 Klebsiella pneumoniae subsp. pneumoniae MGH 78578
WP_012732830          131 APWQDADSDLHDQEYVYLVVDPGHW 155 Burkholderia glumae
WP_011804809          118 KPWEDADGDLWDQGYVYVQVDAGRW 142 Acidovorax sp. JS42
Q47CP9                114 KPWEDADGDLYDQGYVYVQVDNGQW 138 Dechloromonas aromatica RCB
BAN51543              114 DPWEDEKGDLYVPGFIYTEVEARRW 138 Pseudomonas resinovorans NBRC 106553
calssnu:BYI23_E003290 122 APWIDSKDDLHYPSYLFTEVQPRRW 146 Burkholderia sp. YI23
jgi:Mpe_B0369         144 APWIDKNDDLHYPSYLFTEVQARRW 168 Methylibium petroleiphilum PM1
Q5NX54                127 FPWTDKNDNLHSGGYVYTEIEQRKW 151 Aromatoleum aromaticum EbN1
Q3IUW5                115 APHRDADGLLYEASFVHFVVREARW 139 Rhodobacter sphaeroides 2.4.1
CAX53649              146 APWVDEQDSFHQPAVVEFVKKKSRW 170 Erwinia billingiae Eb661
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