Conserved Protein Domain Family
Cas_Csy2

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pfam09614: Cas_Csy2 (This model is not part of the current CDD release)
CRISPR-associated protein (Cas_Csy2)
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.
Statistics
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PSSM-Id: 490496
Aligned: 28 rows
Threshold Bit Score: 241.011
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012203144  11 LTFPHLRVQNANAISSPLTHGFPSITAFTGLMWALERKLa---------QAGIPLRLHAVGVVCHHHQEQVTQG---YVR 78  Delftia
Q9CNW7         8 ILFDHIKVQSANAISGPLSYGFPALTGLTGAMHALNRKL-----------THHPVQFGGVMVACHDYELQTYQNsafSDR 76  Pasteurella mul...
WP_011927918  18 LLIKRLEVINANALSSPLTYGFPAITAFTGAVHALSRKInr-------sEALADIFLDGVLIAAHSCQPQTYREyfnKPF 90  Dichelobacter n...
WP_022381642   5 LVIRKMQIHNANAMSSTYTIGVPAMTAWLGAVHALERKVrglnqkkredTDFSEIHFTGVAVSFHKTRLHVFKGa--YGN 82  Dialister hominis
WP_014454508   5 LIIPHLIVQNANAQSSPYTLGFPAMTAFLGATHAFQRILs---------KQYPEFQVKSTGVVCHNMELRTHKGygdFVH 75  Spirochaeta afr...
WP_013818081   7 LLLPHLKIHNANALSSPYTIGFPAMTAWLGAVHALQRQLr--------qQGLSELQLNGVAVSCHQFDLQTYQGpgdFVR 78  Methylomonas me...
WP_013662442   8 LMLPHIQVHNANALSSPYTIGFPAMTAWLGAVHALQRRLn--------qHGI-GVRFEAVGVVSHDVNLQTYKGtndFVS 78  Marinomonas med...
WP_011769776   8 LLLPHIKVHNANALSSPFTIGFPAMTAWLGAVHALQRKLn--------aKGYDAVKFISVGVVSHQCDLQTHKGvgdYVH 79  Psychromonas in...
WP_014703621   6 ILLPHIKVQNANALSSPFTIGFPAMTAWLGAVHALQRKLn---------MQDSPVEFSAIGVVVHHFDLQTYKGpgdFVH 76  Methylophaga fr...
WP_005371074   5 LIVPQLKIHNANALSSPYTLGFPAMTAWFGGIHALQRQLn--------aGAFAGLRFTRAAVACHRIDQQTYKGsgdFVH 76  Methylomicrobiu...
WP_012203144  79 SFNLTRNPV------DKDG---S---TAAIVEEGRIHLDISLVFTVSEKrvpgsnsaptLVqsAAE----PMQQWADEAG 142 Delftia
Q9CNW7        77 TFKQTRNPI------KRNG---E---TASIIEEGKIHLDLSLVVEVHVQdd-------rVFeaLTDktsqASQDFLQTCK 137 Pasteurella mul...
WP_011927918  91 TFIQSRHPV------EKTG---D---TAPIIQEGYCHLTVSLLIGVYAK--------------DGYlseeQIEALKKQLF 144 Dichelobacter n...
WP_022381642  83 AVVNTANPL------IKKGadwE---RPPTIEEPHIDLSASILIEIDGLd---------PD---------DKDAILEKVQ 135 Dialister hominis
WP_014454508  76 SVINTANPI------TKDG---K---RPSFIEEPKCSLDITLIMEVDGMpl-----------------gsEEHKFQKTAS 126 Spirochaeta afr...
WP_013818081  79 SIVGTANPL------DKDG---R---RPAFVEEARCHLEVSLLIEIQGLd---------SD---------DDQRFIELVN 128 Methylomonas me...
WP_013662442  79 SIIGTGNPL------DKSG---E---RSSFIEEARCHLEVSLVIECSHIe---------IE---------DQEQALAAIV 128 Marinomonas med...
WP_011769776  80 SIIGTGNPL------DKTG---S---RSAFIEEARCHLDVSLIIEYTGTa---------KE---------NEDAVKDKIT 129 Psychromonas in...
WP_014703621  77 SIIGTGNPLepksekDKPK---GnavRPSFIEEARCHLEVSLVIEYNCIe---------AQ---------DESQMLERLH 135 Methylophaga fr...
WP_005371074  77 SIIGTGNPL------DKTG---E---RPSFIEEARCHLTVSLAIECQGVg---------QG---------DIAEFTQAVE 126 Methylomicrobiu...
WP_012203144 143 QILS-QMRVAGGSLLpsraapgRRVRPRLSVLAEDATERSRQFREWRRQWLPGFALVGRDDLLADRLHR-LRD------- 213 Delftia
Q9CNW7       138 NLLW-QQRIAGGSVL-------EIGNVQLFNLEE--------DQDIPLALMPAFVLMDAKQELANITEE-LKTglrigql 200 Pasteurella mul...
WP_011927918 145 IAIQ-QQPLAGGNVI-------GLDAQEPIQF------YKDDVDQCVSELLPAFVLIDAHKELTAITQE-LQK------- 202 Dichelobacter n...
WP_022381642 136 SEIW-RMKIAGGDIN-------RIQSMSIQYT--DVDDPAT-IRRVRGMLMPGYVIIERRDILKQEMEN-GT-------- 195 Dialister hominis
WP_014454508 127 EVLDsKMRIAGGDIL-------AYQPMIYQSV--DSEDPVT-LSRFKRLLMPGYVLVERRDLMIQEMQD-GN-------- 187 Spirochaeta afr...
WP_013818081 129 QQVQ-RMKFAGGDLL-------SSRPVEILPV--NEDE-PASMKKALNKLMLGYVLIERRALLADSMRQeGQ-------- 189 Methylomonas me...
WP_013662442 129 HLLNgSMKLAGGDIQ-------KFTQPYFMVV--EEGD-DENMRRFKRALMPGYALIERRDLIVEAMKE-GA-------- 189 Marinomonas med...
WP_011769776 130 QLLNsSMKMAGGDIL-------TFNLPDFFKI--EAGN-TKDIHKLIRKVMPGYALIERRDLMIEAMEQ-GQ-------- 190 Psychromonas in...
WP_014703621 136 QLLLgNIKLAGGDIL-------SCGTPEIVRD----------FDMAKRKLMPGYALVERRDLMQEAMEQ-GQ-------- 189 Methylophaga fr...
WP_005371074 127 SRLY-RLKLAGGDIL-------SFKTPETLTI--DGDN---ELARLTRKLMPSYVLQERRELMTEAMRN-GQ-------- 184 Methylomicrobiu...
WP_012203144 214 ------------KAAHTTLLDAWLHASRFNHEPVSAAEGQppp---------adgKHPWADPWRGpg-----sGWIVPVP 267 Delftia
Q9CNW7       201 deegnvqksclpSCPEATALDALLEMATVHHIPEHANAT----------------ASAWQTYSVKkg-----rGWLVPLP 259 Pasteurella mul...
WP_011927918 203 ------------DNPAATALDALIETASLHHIPSDEQ------------------ENNWEIYSVKkg-----rGWLVPIP 247 Dichelobacter n...
WP_022381642 196 -----------------NGLDALLDYTKVNMSARKDENGK---------------ITGWNLSRKg-------tGWIIPIS 236 Dialister hominis
WP_014454508 188 -----------------DALDALLNCMKIDHSCEQSEDG----------------TVEWQ-SKRKy------pGWLVPVA 227 Spirochaeta afr...
WP_013818081 190 -----------------DALDALLDYLTIQHRATQDGE-----------------TVSWE-SKRKt------aGWLVPIA 228 Methylomonas me...
WP_013662442 190 -----------------DALEAIIDHLAIHHTCTVSQADSekeneeenaagenieKVDWK-THRKtrdg-mslGWLVPIA 250 Marinomonas med...
WP_011769776 191 -----------------DAIDAVLDNLAIHHTATTDENTKge------------sTVTWS-SKRKt------kGWIVPIA 234 Psychromonas in...
WP_014703621 190 -----------------DAMDAMLDYLAIHHTSSKDEKGGe-------------eRVHW-LSQRKatgpngerGWIVPIA 238 Methylophaga fr...
WP_005371074 185 -----------------DAIDALLSYLKVEHRSRPLGNG----------------KGEWT-AKRKa------eGWLVPIA 224 Methylomicrobiu...
WP_012203144 268 VGYAALSPSHAAGEVLNARDATTPLRFVESVYSLGEWISPHRL-THLEQLLWHAHTDEKRGLYRC 331 Delftia
Q9CNW7       260 VGYQAISPLFAPGQLQHCRTQQYPSQYVETLYSLGKWVFPLSLpENLSQCFWRYTAP-QNNLYLI 323 Pasteurella multocida
WP_011927918 248 IGYQGISPQYDAGVMKNARNPHYPSQYVEALYSLGKWVFPYSI-DLIDNAMWYQKYDAEKDLYLV 311 Dichelobacter nodosus
WP_022381642 237 VGFKGLSPL---GICRNQRDKETQHRFAESVVTLGEFRMPYHF-DSIDDMMWRYAYDENQELYLC 297 Dialister hominis
WP_014454508 228 VGYQGVSEL---GRVSRQRDPTVQHRFAEAIVTLGEFVMPYRL-KKVDSLLWHYESDQEKGLYFC 288 Spirochaeta africana
WP_013818081 229 VGFQGISKP---GVAKHQRDPDTPHRFAESVVTLGEFVMPHRI-NTLDDMLWQYRVDLQRNLYLC 289 Methylomonas methanica
WP_013662442 251 TGFQGVSEL---GEAKNQRDPDTPHRFAESVVTLGEFKMPHRL-NRVEELLWRYH--QEGDLYLC 309 Marinomonas mediterranea
WP_011769776 235 TGFHGLTEL---GQAKNQRDPNTLHRFAESVVTLGEFKMPHRI-KSLNEILWSYHADIPNNLYLC 295 Psychromonas ingrahamii
WP_014703621 239 TGFHGISDL---GNALNQRDPDTPHRFAESLVTLGEFKMPYRL-ASPEDLLWRYLVEPENNLYLC 299 Methylophaga frappieri
WP_005371074 225 TGFHGITEL---GFAENQRDPDTPHRFAESLVTLGEFVMPYRI-KRLDDLLWHTRYDAENNLYLC 285 Methylomicrobium album
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