Conserved Protein Domain Family
Cas_Csy1

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pfam09611: Cas_Csy1 (This model is not part of the current CDD release)
CRISPR-associated protein (Cas_Csy1)
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.
Statistics
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PSSM-Id: 518967
Aligned: 24 rows
Threshold Bit Score: 409.387
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
UCNUF:Cenrod_2216  41 DFAPAAWLEDAARRAA-QIQVVTHSLKPIHPEAKGTNLYC-----PPDALAPVPVVGSHCLTdDFAGDVVGNAAA----L 110
WP_013818080       77 KYDVKTWLRKVSTQAK-P-NIVTHPAKFTNPKIDTass-----iiYHGEQHNDGYVRTGNVKlSVNVDVSGNSATntiiF 149 Methylomon...
WP_014016721       16 kktHNAWLQSVVDRIP-SCTLSTHVGKFTNPEVKVNi-------lDRGQGTNREYVSTDTV--THDIDIVVSSAAy---L 82  Megasphaer...
WP_014454507       42 KFHPAEWCAENARRAK-SLSLVTHNPKFSHPDIKIKDvnv---iqVTAQQKDDGYLRTGNC--EYKSDAYGDAAS----L 111 Spirochaet...
WP_005371072       41 KFAPENWIPDAAKRAA-WLSIVSHSGKFTHPGVKisp------viSTPPHKRDGYLRSGNA--DADFDVFGNAAA----L 107 Methylomic...
WP_014703622       41 EFSLEKWLPNAAKRAG-QISISTHPCTFSHPSSRKNKNGYatsviAKSSREPDGYLRTGNV--DVQADALGNAAA----L 113 Methylopha...
WP_013662443       40 vFALKNWLPNAAKRAG-QMSISTHPCTFSHPSARKNKNGYasaiiARSNRGEDGFLRTGNI--DVEADALGNAAA----L 112 Marinomona...
WP_011927917       39 KYRPDIWLQDAQKKAE-RFKVGTHISKGIHSQSQGDNVYF-------SQKVDHDYVNTKTVT-NNYLDGGGAASD----F 105 Dichelobac...
Q9CNW8             51 YYQYDICMSDFAIRMTaQLTFGTHISKGIHPDSRGNNVKF------QATFIYNEYVGSHCLK-TLELDANGDASA----L 119 Pasteurell...
WP_012203143       42 QHQRDTWMEDAARRVT-QIQAVTHSLKPIHPDARGTNLYV-----EPASLPALQELGSHALGqSFAGDVVGNAAA----L 111 Delftia
UCNUF:Cenrod_2216 111 DVYKFLKQ---EH-EGQTLLALAVSGDVDWAQALSDDP----AQAQAWMSAFASLATPH-GNPTSHTLAKQLYWPVGDdl 181
WP_013818080      150 ELYSLLGI---TLqDNKKVINYFEEDVKELVKYMSDMG----IKYKDFKDKCLNVFYGMnSEQSTHEMVRQVYFPVNT-- 220 Methylomon...
WP_014016721       83 STASLLML---PLeDRQLVLLHLKQRDLALKKDFTSLG----IDYEKVCTDVDGLFQAA-LPDHTDQNLKQVYFPVS--- 151 Megasphaer...
WP_014454507      112 AVLKFLQL---EMtDGRTVLEHFERSSEELRKEIGVSA----GQFAEMREQFLNITMPK-SKDTTSDLLKQVYFPV---- 179 Spirochaet...
WP_005371072      108 DVFKFLSL---PLsDGQTVLEHLEQNSELIRRQFNLAA----TSFAELQKGLMAIKPDEiAKIKTSEKIKQVYFPI---- 176 Methylomic...
WP_014703622      114 DVHKFLSL---VTeDGSTVIEHIEQDSELGKTLLNTPS----ESYANLKSGFMAMARSD-DTPVTSSKIKQVYFPA---- 181 Methylopha...
WP_013662443      113 DVYKFLTL---KLaDGQSLIQHIEQDSEQSKSLLELSNiaegETYEQLKQGFLAMTSVD-DNVITSSKIKQVYFPVSSd- 187 Marinomona...
WP_011927917      106 PLASFFEWeviTG-SGIKMRDVIWENGAAVQRCFADDP----ELSQTYQQTFLTCLQAQpQNPQTDALNKQLLWALPQtd 180 Dichelobac...
Q9CNW8            120 PLVALFDYiidDE-NELTLRELLLADDPRLVGCFADDL----ELSEQYKKRFQDVLTGEvRELATYELNKQLFWVNSVss 194 Pasteurell...
WP_012203143      112 DVYKFLKV---EV-DGTSLLAALLAQDPGALQALHEDP----QQAMGLRDAFVGLTQPRaGAPSSHTRAKQLYWLTGSda 183 Delftia
UCNUF:Cenrod_2216 182 hDDAGYHLLAPLYASSLAHRLYQTLQDD---RFSDEAKAAREARKADLVSERPVRDYPNLAVQQLG---------GTKPQ 249
WP_013818080      221 -PLADYHLLSAVTASMLMFEVKNRIDGF---NRRVNGQNIRNLKKNNQFHGEGFDEIPNLTEIWFGyssnedasrFTKMG 296 Methylomon...
WP_014016721      152 --DGNYHLLTVMPSSSLLLQLKKRIDDM--------GSEEREHKKSGE----AYTKIFSLTGIGFG---------GTKPQ 208 Megasphaer...
WP_014454507      180 --GDDYHLLSLITPGGLISVLKQRIDDV---RFGNGVNEARDQKRNGKFSECGYADIPNLAVIGYG---------GTKAQ 245 Spirochaet...
WP_005371072      177 --EGGYHLLSILTPSGLMFKLKERINAM---RFSEQAKQARDDRRNQAHNEHGCDEIYNLAAIGFG---------GTKPQ 242 Methylomic...
WP_014703622      182 --DKDYHQLSILSNSGMIFELRRRIDAL---RFSDAVKEGRELRRNNTYSESGYSEIYDITTIGYG---------GTKPQ 247 Methylopha...
WP_013662443      188 sTNQAYHQLSILTPSGIVFEMRKRLDAM---RFGDEIKAAREKRKNNEQHEN-YREIYDLTTIGYG---------GTKPQ 254 Marinomona...
WP_011927917      181 dNRDNYLVLVPLHPSVLTHEFYHKIEAInnnRFDVKSKSVPQKR---------YADLLDLAQIKLG---------GSKPQ 242 Dichelobac...
Q9CNW8            195 iENDDYICLIPLYPSALTHTFYQKIVQT---RYSEKNKNASTKRYKKVSGQEHYCSINDLGIVSLG---------GSNSQ 262 Pasteurell...
WP_012203143      184 cADEGYELLAPLFATTLAHAVHAQVQED---RFGESNKAARQARRERKAHDGVFHDYPGLAVQKMG---------GTKPQ 251 Delftia
UCNUF:Cenrod_2216 250 NISQLNSERRGQNSLLASLPPMWRSVEl-KPLWGTESMFPR---YKSRPAVKENLGALLAFLKTDPKR--NV----DTRD 319
WP_013818080      297 NVSLLNVRNQ-KAYLIPSIPPQIQQRQ---------VRLPSqnfFKNSLNPKRFKDDFQPLDKLIRSDlnNI----HIRE 362 Methylomon...
WP_014016721      209 NISTLNSRQHGIAYLLPSLPPQLKLRT---------LRFPKrdfFRESIPYRPLNDLLHQLHVILKTEknNM----GIRM 275 Megasphaer...
WP_014454507      246 NIGQLNLGNGGKATMLMTLPPALQDRK---------VYPPRtnfFRNCLRVNTVEEFFDSLDHLRAIDynNA----SIRS 312 Spirochaet...
WP_005371072      243 NISVLNNQNGGIAYLLPSLPPVLAQRV---------VRRPKssfFKDSLYFKPYREEFLALHRLFMAKpnNI----DIRD 309 Methylomic...
WP_014703622      248 NVSVLNNQNGGKAHLLLSVPPLLEQRD---------VRFPArdfFIQSLRYYDCKDILERLDKVFKIErdGQipleKIRK 318 Methylopha...
WP_013662443      255 NISVLNNQNGGKAHLLMSLPPQIEKRD---------IHFPNtdfFAQSINYFKCRDTFLRLHKLYQSDenNM----HVRA 321 Marinomona...
WP_011927917      243 NISVLTSKQRGINYLLPSLPPVFRARQdiHFSPKLESIFFSks------lYYRVEDDLKILFGVIYCKenNY----EIRN 312 Dichelobac...
Q9CNW8            263 NVSQLNSSQKGRHYLLPSLPPRCKTHKikPINLLSNTIFNNd-------lAYICQGGLDKLYSVVKAQknVY----TVRD 331 Pasteurell...
WP_012203143      252 NISQLNSERGGVNYLLASLPPVWRSSDv-RLPVHASSVFDRl--FIGRPEVRSTVRKLRAFLATDPEP--NL----QTRE 322 Delftia
UCNUF:Cenrod_2216 320 RRAAYVDNLIDDFLQFTAEVRTL--EPGWSCNNKC--RLPAEQAYWLDPEGAAq-ADAELGRP-PPTDTHERICEAYANW 393
WP_013818080      363 GIRNCLKYLIDRVLQRAFAVRa--fGVGWSQTEHYq-NLPRAQRIWLD--------DAYLEQRqQEEEWLEEIVLAFANW 431 Methylomon...
WP_014016721      276 QRDEVTAALVDLVLMTAYEFRk--hEAGWSNQPSFs-NLPQAQKIFLD--------DAYKADR-SEGTWQQMISRSFARY 343 Megasphaer...
WP_014454507      313 AIEHWYKKIIDQIVAQAWAIRr--eCTGWSYDERYs-AVPLYQKLWLD--------EARQSERdLSEDWQQSVIENMVQW 381 Spirochaet...
WP_005371072      310 GRDDWIISIAERVLETVGQLRq--eTAGWSENT----RLPLAQKIWLD--------SAFDAWReQEDEWLAEIIVSLADW 375 Methylomic...
WP_014703622      319 GRDRCLGDILDVILQKMMALRDVstQQYWPETS----KLRAWQKLWLC--------EQHKEQRlQEDDWLNTLCDQIARW 386 Methylopha...
WP_013662443      322 DRDDMYQNIVDYIIETMWQVRSVasEQYLETMS----QLNQTQIIWLC--------AHTAEIRdTTDDWLDAILSSITQF 389 Marinomona...
WP_011927917      313 MRKAAVHRIAHQILSIGETICALr-PAGWSKDY----DLSSAQKYWLDPKRADlaGEEKFKAErDAADWDKAIEKDFANW 387 Dichelobac...
Q9CNW8            332 NRSKALNMILESILDIVSELQKQ--PAGWSKDS----QLEMCEKYWLDPKRVHlpDEEAFRAEyEKGEWVAEVERRFALW 405 Pasteurell...
WP_012203143      323 RREAFMDALIDEMVSLAGEVQQTl-PAGWSRDVERfgKLVREEQLWLDPLRTElrDEADFAREwLWMDWPAEVGKRFANW 401 Delftia
UCNUF:Cenrod_2216 394 LNAQLRDP------LPMGDPEFEAWR 413
WP_013818080      432 ILDSYELLfkq-tcKQLSDYELREVK 456 Methylomonas methanica
WP_014016721      344 IISQYEKVmks-ekIVLGDAELSYLQ 368 Megasphaera elsdenii
WP_014454507      382 IRMTYEKRknm-kgPKFDSTEiqfmt 406 Spirochaeta africana
WP_005371072      376 FRIAYRNVigaekaIALGDDELKHIR 401 Methylomicrobium album
WP_014703622      387 IVSSYKNSik--hpVMLGEAEHHYIK 410 Methylophaga frappieri
WP_013662443      390 VFHGYEKVlgk-kaVKLGDAEKKHMA 414 Marinomonas mediterranea
WP_011927917      388 LQKVLEERfkk-hrHEFTDIEHYEWQ 412 Dichelobacter nodosus
Q9CNW8            406 LNKRLQKRfph-iaKDFDDVEYHEWR 430 Pasteurella multocida
WP_012203143      402 LNSQLFGQ------LPVGDAEARVWK 421 Delftia
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