5YEU


Conserved Protein Domain Family
YqaJ

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pfam09588: YqaJ (This model is not part of the current CDD release)
YqaJ-like viral recombinase domain
This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.
Statistics
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PSSM-Id: 518956
Aligned: 17 rows
Threshold Bit Score: 99.0015
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5YEU_A        45 EWLKQRTESL-TATAISVvf--dEDp--yKH-PIVILLDKCGRg--------LPF----VeNKFVHHGNKYEQIGTMFYS 106 Acanthamoeba po...
1_pfamImport   1 EWLNARLGIP-TATGIENivtpsGKk--sSA-WNSYLAELVAEsie---gakDGF----K-SSDMARGNELEPLARMAYE 68 
Q55ES1        23 KWEEAREKYSlTGSRLAAai--gIDp--yTS-QHDLKLILAKKktpf---------fsdYcKKAMEHGKHQEPIAREFYF 88  Dictyostelium d...
Q7VSC5        15 gWLPDRCGRV-TGSRAADml-amTAkkewSTkRADYKFELAIEvltg--mpqGSD----YtSKEMQWGIDQEPFARMAYE 86  Bordetella pert...
Q7N2Y7        24 DWQRLRLGVI-TASEAGKvi--------sKPrSGTKWTDMKLTyfytllgevCTGstpeVnAKTLAWGKNYEESARATFE 94  Photorhabdus la...
EDO30936     164 LWFGMRAGRI-TSSKFHQac--hTNp--lSP-SVSLIKDVCYGs--------------kFlTAAVRWGRTHEKDALDKYK 223
Q5UQV1       185 EWLKQRTESL-TATAISVvf--dEDp--yKH-PIVILLDKCGRg--------LPF----VeNKFVHHGNKYEQIGTMFYS 246 Acanthamoeba po...
WP_016502347  12 EWHAWRREGM-SATSCAVvm--gENp--dKT-PLELWKELVGIvep----------adlSvIPQVRRGVKFEPLALQAFE 75  Pseudomonadaceae
Q0AUQ0        16 EWLLMRKQGI-GGSDAAAic--gLSr--wRS-PMDVWLEKTGQl--------EPE----KaGEAAYWGQIMEPIIREEFT 77  Syntrophomonas ...
WP_012103275  15 DWLNFRNKGI-GGSDVAAlc--gINk--yKS-SVELWMEKTGQi--------KPK----EsGEAAYWGTKMEPIIREEFT 76  Clostridium klu...
5YEU_A       107 FRNNVEVGE------YGLLQHs-----GHKFIAASPDGICskkanTgglsklVGRLLEIKFPF-SREINNSGDld----- 169 Acanthamoeba po...
1_pfamImport  69 FETDTEVVQv-----GGVYLN------AEKQLMVSPDGLI-----Pn-----LKKGLEIKCPK-MKTHIKYLLe------ 120
Q55ES1        89 NELE-----------TSIIEKgifplpGDKRIGCSPDGVIyttvpGkdgvlqREGVIEIKCPL-STTNFSGLKngrkpda 156 Dictyostelium d...
Q7VSC5        87 EASG-NVAIe-----SGFMYL------PDVAAGCSVDGLFve--dG------RRGVLETKCPK-STTHIRYLEa------ 139 Bordetella pert...
Q7N2Y7        95 FVADVNVTEt-----SILFKD------ESLRTACSPDGICs-----------DGLGLELKCPFtTAVFMKFRLgg----- 147 Photorhabdus la...
EDO30936     224 QAMK-DKHQdfhineSGLFINp-----DHPHLGASPDAISsrkchG-------AGCVEVKCPY-SARVGPITAdtidclv 289
Q5UQV1       247 FRNNVEVGE------YGLLQHs-----GHKFIAASPDGICskkanTgglsklVGRLLEIKFPF-SREINNsgdl------ 308 Acanthamoeba po...
WP_016502347  76 DKYG-KMALp------FCAESt-----AYPFIRASFDGVL-----D------DKSPVEIKNLS-ETNHLEVLQlre---- 127 Pseudomonadaceae
Q0AUQ0        78 IRTGMKVTTi-----NSMLKHr-----RFTFMLANLDGVVqdpnrG-------QGIFEAKTAG-L--YASSEWg------ 131 Syntrophomonas ...
WP_012103275  77 TRTNLKVNIv-----NSILKHe-----KYDFMLANIDGIVydtkfG-------NCIFEAKTAS-A--FKQSQWe------ 130 Clostridium klu...
5YEU_A       170 ---gdIC----PHYYFLQVQTQLYVTEMD 191 Acanthamoeba polyphaga mimivirus
1_pfamImport 121 ----gGV----PNEYLIQVQSALWVTGYE 141
Q55ES1       157 lanaqKI----PLDYIPQIFANMACTGAQ 181 Dictyostelium discoideum AX4
Q7VSC5       140 ----gTL----PDQYRPQCLHNVWVTGAE 160 Bordetella pertussis
Q7N2Y7       148 ---fdAI----KSEYMAQVQYSMWVTGKN 169 Photorhabdus laumondii subsp. laumondii
EDO30936     290 ltpdgRLqldrKHAYYSQLQLQMASTTYH 318
Q5UQV1       309 --dgdIC----PHYYFLQVQTQLYVTEMD 331 Acanthamoeba polyphaga mimivirus
WP_016502347 128 ---hsKA----FKLYRWQVMHQMIVSGAr 149 Pseudomonadaceae
Q0AUQ0       132 ----dSL----PDEYAIQVQHYLAVTGLP 152 Syntrophomonas wolfei subsp. wolfei str. Goettingen G311
WP_012103275 131 ----kSI----PEEYMLQIQHYMAITNFK 151 Clostridium kluyveri
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