Conserved Protein Domain Family
RE_HpaII

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pfam09561: RE_HpaII (This model is not part of the current CDD release)
HpaII restriction endonuclease
This family includes the HpaII (recognizes and cleaves C^CGG) restriction endonuclease.
Statistics
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PSSM-Id: 490460
Aligned: 16 rows
Threshold Bit Score: 390.501
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013452585     5 NKGEWSELYVFFQLLSEGKLYSADeklern-gnfveVQS-IKRNDFGKPKDYKIETSgnvNIVDSETGNIl-RAIPRAEI 81  Marivirga tra...
CDD82971         6 TKREWGEVQSFLRLLADGYVCAGTptgeacterpyrIAV-VQREEHDGTRRYLIEGDd-iHIVGEKMDKR----VPREYF 79 
WP_005851449     6 TKREWGELYAFFRLLADGYVYAGTpdvkrnevqklpVAM-VQREEHDGTRRYILEDEatvRICGEKIDKQ----IPREDF 80  Phocaeicola
CDC82814         7 NKGEWSEIYAFLRLLEIKKLYAADaelnkkddmfynIIS-IIRTEPIGTLEFRINKAddtVSVIKTDTEDvlLTLPRDEF 85 
jgi:Cyast_0446 304 NKGEWTERYSFFKIINDQRINLADktlqkn-nsyfnVTK-ISTLNLD--ENIILVDKdsiIVENKITKSKkeINISELIN 379
Q30PG8         306 NKGEWSELFAFIKILLEQKLLLSDkelnpt-gdffkINK-ITTENLD--LEFIPVSDfkiKSIHTKTKEEaeIDISSIIT 381 Sulfurimonas ...
CDA44980         6 NKGEWSEIYTLFKLLGEGKVHAGDadmnkl-elyypILN-VIREESKK-YEYKPNVDqhiVVIDEDGNEF--ARISMNKF 80 
1_pfamImport     1 NKGEWSEVYALFKLLGDKQLFAGDanlnkveelfypIIK-IIRNESGGNFQYEINGD---LVIISGGKEE--LRIPVKTF 74 
WP_014387411     5 NKGEWSEVYTLLKVISDKQLFAGDsnlnkietlifpIIK-VLRDETNGTFEFSYDND---LVIVKNGEEE--IRISVLEF 78  Flavobacteriu...
WP_015692770     5 NKGEWSEIYTLLKLISDGVLPQGDahlva--tdfeyIVEaVYRSEKDGLKEYHINSDqksVLLIDGEEQ---VEIPLEEF 79  Saprospira gr...
WP_013452585    82 VDITRNLIRELKQGKGKAFGVsSSLEANINSFMIEKVSESY-GLKGDINLYIYDpvnsiLTDQKFSIKSLLgSNPTAFNA 160 Marivirga tra...
CDD82971        80 KAAAELIADAMKRTHTDGMESpDGVEEFLDEIAVYDLEAKT-DDRTDYHIGFWTv---eAPLVGFRVCSRLaPMNPLLDG 155
WP_005851449    81 AAVAELVFAAVKESRENDVMSpDGVEEFLDEVAIYDLEAKT-DDRTDFYVAFYSi---eAPLVGFCVRSRLgTMFPLLDG 156 Phocaeicola
CDC82814        86 KTAADNLYNEIINANKSSFES-QDTEEFLEQLNIGVLKAKS-TDKADIRIKIHDintgyETVQGFSIKSRLgSPSTLVNA 163
jgi:Cyast_0446 380 QNVLDNLVNQIKD-NKGTFEI-NEMIAIQNKLGISIIKGGQsNQKSDVILDI-NkdhffKVNEGFGIKSYLgNKPTLLNA 456
Q30PG8         382 DETLTNILNQIKA-GSGTFEI-NDFEIIQTALGFSIVKGGNsSQKADIVLDI-EhntfvKENEGFGIKSYLgSKPTLLNA 458 Sulfurimonas ...
CDA44980        81 LEESSKLLTEIKAANDPAFEI-PATESFMTEIGCSKLKAPS-KDKADIHIVIHDlrtnmTPLLGFSIKSQLgSASTLLNA 158
1_pfamImport    75 TEQSAKLLSTIKG-STGAFNI-PEIETFMNSINCSSLKAKS-TSKSDIRIVIHDqrisqTAELGFSIKSQLgGQATLLNA 151
WP_014387411    79 QKQAHFLLTKLKEKTNATFSI-PEIESFINSFDSHSLKAKS-SVKSDIRIVIHDlrtgtNPELGFSIKSQLgGASTLLNA 156 Flavobacteriu...
WP_015692770    80 EAIKTVVLDGIRQAPKGTFLI-EEAIPFLSTIHCLSLKAKS-SSKKDIEVLIYDyrvarSSKLGFSIKSQLgNPSTLLNA 157 Saprospira gr...
WP_013452585   161 NPTTNIIYEILTK-DGKPLEENEIIEINEIDTrhk-yidRVRFILD-NYSIHYRDYQGEVFKLNLQLIDSSLPEIIASAV 237 Marivirga tra...
CDD82971       156 GRTANLKFEQTGV-KFATPTVNKINAL---ESpne-vidRMRMIDRlGGVLKYSDVADKVFRSNLSMIDLHFPRLLAEMV 230
WP_005851449   157 GRTANLKFEQTGV-KFATPTVNKINAFG--EEddv--agRMLMIERlGGILKYNDVADKVFRSNLCMIDLHFPRMLGEML 231 Phocaeicola
CDC82814       164 GKTTNFVFEVIG--------NINDDVMNGFNTcskkfkdRFDFLSGyDCDIEYCSMDNDIFESNLQLIDGDLPKICAYML 235
jgi:Cyast_0446 457 SGNTNFIFRVNNL------SSYSLDEINNIKkl----kdRINKIINlGGIFSFYKIEKETMAYNLRIIDSMMPNLLAEML 526
Q30PG8         459 SGNTNFMFEIDGL------DNSKISEINQISTatk-lrdRIVAINKnGGTFRYLKAEKDTMNYNLKMVDNVLPEIIGYLL 531 Sulfurimonas ...
CDA44980       159 GTTTNITYKVIGTeL----SDEDIEEVNSIKGhl----pRMQAILDkGCNLKYSDIEHTIFKNNLLFLDSCMPQFVADCL 230
1_pfamImport   152 GKTTNFVYQVSGF----QPIENEIQTINEIDTksk-ikdRIESVKQfGGNLDYLSLEQDVFKNNLVLIDSLLPNILAEIV 226
WP_014387411   157 GKTTNFIFKIQNL----TLTQNQISEINAIETrsk-ikdRIEKISEfGGSLEFQKTESSIFGNNLILIDSALPKIIAESL 231 Flavobacteriu...
WP_015692770   158 SKATNFQFWL--------PQEVNAESINKISTssk-ikkRIEAIYEeVGQLVFTTIQNQTFANNLCLIDSALPQIIAALL 228 Saprospira gr...
WP_013452585   238 LNKYA--FGITKFNEVIEKLND-ANPCNYN--LKHGHSFYEYRLINFMVESSLGMTSATVWSGEYDVIGgIIIVKGNEEV 312 Marivirga tra...
CDD82971       231 RTMYV--EDMTRVSELTERIRE-INPLKIKeeLITKHRFYEYKMKQFLLALALGMRPAKLFNGTDSAVEgFIMVDTEGCP 307
WP_005851449   232 RVMHL--DGISKVSDLTEAIKQ-INPLKIKdeLIHKHSYYEYKMKQFLMALALGMRPAKIFNGIDSAISgFLFVNGNGEV 308 Phocaeicola
CDC82814       236 KEYYS--SGVNTVTNSLESLNV-NNPIGYN--LSKGHPFYEYKFKKFLAECALGMLPSKVWDGTADATGgYIIVREDGEV 310
jgi:Cyast_0446 527 LEFFV--HRNNLISE--NLLTIyQKQLAQT--MIDDLPSLTIKLKRFLVGVLLGFFAETKWDGKY-SSNgTIVVKENGEQ 599
Q30PG8         532 MAFYG--NRISNLSDIVNYLCDyTDILTHL--DIDDKAMLINKLKKFLVDILLGFFAGEKWNGSY-ASNgTIVVKENGDL 606 Sulfurimonas ...
CDA44980       231 LINSLp-SSKSSIKECVAEIAK-RNPFNFN--GKNIEAFYAHKMKVLLLDAALGMTPAKEWTGRYDANGgYLVVRKDGEI 306
1_pfamImport   227 KTFYT--SNLSSIKDLTENINK-TNPLNYD--NQFAHTFYEYKIKRFLTDVALGMTPSKVWNGIYDATGgYLIVKENGDV 301
WP_014387411   232 KLFYT--STFSTTIELTNQIST-TNPLDYN--LETNHPFYSYKIKRFLTDIALGMMPSKVWTGELDATGgYLVVKENGEV 306 Flavobacteriu...
WP_015692770   229 LIYYSgrAKSSKITDLVEQLRI-ENPLGFP--EIEGQHFYEYKIKRFLTDVALGMTPNTVWDGRFDAGGgYIVVRNDGEL 305 Saprospira gr...
WP_013452585   313 VSYHLIDFNKFKKYLLDNCRLDNPSGSKMGYGTAYIE-EGKSYIKLNFQV 361 Marivirga tractuosa
CDD82971       308 VCYQKADKGTFEDFLFRNTRFEKGSLEKDKYGYLERE-NGAYFFKLNAKI 356
WP_005851449   309 LCYQKADRQVFADFLFVNSRFEKSSTEKDKYGYLERE-NGVYYFKLNLKI 357 Phocaeicola
CDC82814       311 LCYHLFNRNEFETYLINNTKFETASTSRHEFGSIYKE-NGKFYIKLNLQV 359
jgi:Cyast_0446 600 LAFHIIDIVSLEDYLFENIVFDTPSTTRHRYGKLILEnDGCLYFKLNLQL 649
Q30PG8         607 ITFHIINMENLKNYLFENIKLDTPSTSRHKFGTIIQD-KTKNYFKLNLQL 655 Sulfurimonas denitrificans DSM 1251
CDA44980       307 VCYHFYNRNDVEDYLYNNTRFERASRSRYGFGYVYREkDGCIYIKLNLQI 356
1_pfamImport   302 LCYHIYNRNQFEDYLFQNTKLETASSSRHEFGKIYPE-NGKTYFKLNLQI 350
WP_014387411   307 LCYHIYNRNEFEDYLYSNTKLETASSTRHEFGKVYEE-NGQLYFKLNLQI 355 Flavobacterium indicum
WP_015692770   306 VCYHIYDRNQFEDYLFHNTKLDTPSSSRHGFGLIYRE-GGENYFNLNIQI 354 Saprospira grandis
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