Conserved Protein Domain Family
Cas6

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pfam09559: Cas6 (This model is not part of the current CDD release)
Cas6 Crispr
The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.
Statistics
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PSSM-Id: 490458
Aligned: 29 rows
Threshold Bit Score: 212.791
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015193897   5 EIQFALKGKTLPADHGYSLYSALKNIVLENSSQIileeertrdfppEVILSTIPGVPDRQG----------LIYLNRSSR 74  Stanieria cyano...
WP_011814736  44 DVAFPLRGRVLPEAYAVPLADALAPRLAPLLDPG------------EVGIRVTHLPTSGHGwwrt---pdqPILLPRRSR 108 Halorhodospira ...
Q0A841        19 DVTFRLEGHSLPADYAPALAEALADPLADFSRLP------------GFGVKVLHLPVSGNGwhrg---egqPIYLSRRVQ 83  Alkalilimnicola...
WP_012638740  19 DVSYRIDCRCLPLDHAHALSSAVLAALPWMSEEP------------AAGVHLIHGAESGNGwyrpqdpehdLLHLSRRAR 86  Thioalkalivibri...
1_pfamImport   2 DVLFALDCRSIPVDHAFALSQALLDPAPWLSEP-------------GCAIHLIHGAGSQNGwerpehgigrQLHLSRRTK 68 
WP_043108406  20 DLAFSIQCRELPVDHLYALGSALCEAAPVLTEDP------------RVAIHEIHLAGSQNGwerpdpqmgqKLVLSRRTK 87  endosymbiont of...
WP_014777098  20 DVLFAIDCKRLPVDHAHLLSTALQAALPWIAEEP------------GMALHTIHVAGSQNGwerpahgtdsELMLSRRTK 87  Thiocystis viol...
WP_015279164  20 DVQFAIDAKRIPVDHGCALGEAVLAALPWEEGQA------------ALGVHTIHVAGSQNGwqrpdhgqdqFLILSRRTK 87  Thioflavicoccus...
WP_012970461  20 DLLFAIDCKRLPVDHAYALSSAVRALVPWFDEEP------------RLGVHTIHVAGSQNGwerpehspeaLIMVSRRTK 87  Allochromatium ...
WP_005223278  20 ELVFAIDCRALPVDHADALHRALIVAQPWLAETA------------GLGIHSIHGAGSQNGwerpphgtdtCLQLSRRTK 87  Marichromatium ...
WP_015193897  75 LRLRCPSEQASQWYRlFQNQVLDIRGHLIRLVQPRLCLLEPSQTLKARLVTFHlek-wdIHDAPVYFLESCQKSLLSLEI 153 Stanieria cyano...
WP_011814736 109 LVLRVARAHADAVAG-LAGAGLDVAGEALELGGSRLSELPAAPTVYAHRVLGPd----gGAVAESALLAAARQELAEMDI 183 Halorhodospira ...
Q0A841        84 LLLRVPRDRARAALA-LSGTAFEVDGEACRLARGRVRELQQVETLYASRVVPLv----hPEEDEAEFMEAVARRLAAMGV 158 Alkalilimnicola...
WP_012638740  87 FRLRVPRTRLEDARA-LVGQALRLEGHELLIGEAGVLPLQPLPALMARYVVST------PDEAEADFLARAAGALRELGV 159 Thioalkalivibri...
1_pfamImport  69 LCIRVPKSRIASLKNaLEGEVIKVAGSALRIGAGKQRLLSREGTLLARYVAHP------AGLNENGFLSWAVEELAGSGI 142
WP_043108406  88 LHIRAPKELRERIEQaLDGLTIEIDGHPMTIGKARVKTLSRQGTLFARHIVLEp----gEEDDENTFLMRLAKLLQARGI 163 endosymbiont of...
WP_014777098  88 LTIRAPRARVDDILTqLPGTRLELDGHPLTVGVGKIKPLCKDATLFSRYVVTGn-----EDQDEQVFLEIAVRALSGMGI 162 Thiocystis viol...
WP_015279164  88 LTIRVPKSRADALKTaLTGRVLDVAGCRLTVGAGKERPLSKETTLFARYVVDP------HRRNEAQFLDWAAAELHAMDI 161 Thioflavicoccus...
WP_012970461  88 LTIRVPSARADDLAArLQGRRIDVGGQPLTIGAAKPKPLSQETTIFARYLATDpsadaeAFADESRFLEAAAQALGALDI 167 Allochromatium ...
WP_005223278  88 LRLRVPQHLSDSLLAtLPGSHIEVAGHPLTIGQGRIRSLDPNPTQFARHVVCS------AEEDENAFLERAAETLARIEV 161 Marichromatium ...
WP_015193897 154 KGKAFIDsncdGdlALRSLKIKNKNVMGFGVVVENLNDEDSLKLQCYGLGGRKHFGCGWFYPSSE 218 Stanieria cyanosphaera
WP_011814736 184 HPKRLLC----G--RQETLVTPDGPAVTRSLLVDGMGPEAGRRLQARGLGSGRCWGCGLFLPHKA 242 Halorhodospira halophila
Q0A841       159 KPRKMLC----G--RRQTLQTRWGPVTLRSLMVAEMGPEGSYRLQSRGLGDGGLWGCGLFMPHKS 217 Alkalilimnicola ehrlichii MLHE-1
WP_012638740 160 PVTKLLC----G--REHVLRTPDGEVHTRSLMVADLDPHGSVELQRQGLGPMRLMGCGLFIGHKD 218 Thioalkalivibrio sulfidiphilus
1_pfamImport 143 RVRKAIG----G--KSTPLSTPDGPLETRSLLLADLAPDESILLQQRGLGPHHEMGCGIFLPHKG 201
WP_043108406 164 RVKKALC----D--TTQKIATPEGPLTTRSLLLADLRPEDSIALQQDGLGSHRHFGCGIFLPHKG 222 endosymbiont of unidentified s...
WP_014777098 163 QVRKALC----G--KTTALATPDGPLQTRSLMLASLTAEESIRLQQTGLGTHRLMGCGIFIPHKG 221 Thiocystis violascens
WP_015279164 162 RIRKALC----G--KAVTLATPDGPLLTRSLLLANLDVEDSVRLQRLGLGPQRGIGCGLFIPHKG 220 Thioflavicoccus mobilis
WP_012970461 168 RVRKALC----G--KATTLHTPAGPIPTRALMLAGLTREESMRLQREGLGPHRALGCGLFIPHKG 226 Allochromatium vinosum
WP_005223278 162 GVRKALC----G--RALTLVTADGPLHTRSLLLANLPPDESIRLQQHGLGSHRHLGCGLFIAHKG 220 Marichromatium purpuratum
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