Conserved Protein Domain Family
RE_NgoPII

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pfam09521: RE_NgoPII 
NgoPII restriction endonuclease
This family includes the NgoPII (recognizes and cleaves GG^CC) restriction endonuclease.
Statistics
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PSSM-Id: 430661
Aligned: 8 rows
Threshold Bit Score: 338.233
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012857486   2 TNILSAFRTIISNYQTNVQHVTNGS--NRANNMGDGLEAFIKDAFANTFNETNEQTKLEVFSRIYSYSGNKNNPPDLILQ 79  Sulfurospirillu...
WP_012159708   3 TNIIRAIINLVNTPVVELKEYADSH--NRVNSMGGALEEYIKDIFAGTVGEIDEKKRLLKIQECFSYLGNQNNPPDSMLW 80  Alkaliphilus or...
WP_013065582   4 yNIITAIINIIKDNRRVIGNSPNSN--NRLHSLGEPLEEYIKDAFSNSLGLSGVD-KTRKRAEALSYGGGKNNPPDAVLK 80  Xylanibacter ru...
WP_015004950   2 SNIIKAIINIANEPIVQLRDSYTSR--NTINNIGQALEAYMQDAFANTISEPSPQKRNERINEVFSYLGNQNNPPDIILK 79  Cycloclasticus ...
WP_015203144   2 TNILQAINTIINNPIPDLVSYYQSKsqNKINAIGEALEEFIKDVFADTISETDTIKKSKKYEQVFSHQGSQNNPPDLMIK 81  Crinalium epips...
WP_015121748   2 ADILQAIKAIIDNTIPDIVSYSQGK--NRINSAGDALEDFIKDIFSEALKDSDLTLKNKKYSEAFSYIGNQNNPPDIILK 79  Rivularia sp. P...
WP_014796977   2 TNILEAIYAIIQNPIFEIKSFYTGR--NRANSVGDALENYIKDAFANSFHINDEKERMKLFNENFSWLGSQNNPPDIMIK 79  Bernardetia lit...
WP_014165625   2 TNILDAIYNISLIQDLSIDEIIFGN--NRANNMGEGLESFIKDSFANTFNEDNNRILSEKYSVFFSYEGSKNNPPDLMIK 79  Flavobacterium ...
WP_012857486  80 NSDAIEIKKLESASTAIALNSSYPKAKLFSNSTMITTACRTCE--AWSEKDMLYAIGNVPKTTnqLKSLWLVYGDCFCAD 157 Sulfurospirillu...
WP_012159708  81 GGDAIEVKKIESKDAQLALNSSYPKAKLFSNSKMIKKACRACE--DWTVKDMIYTVGVVKDSK--LSSLCMVYGIDYAAD 156 Alkaliphilus or...
WP_013065582  81 RGAAIEVKKVESIGN-INLNSSYPKSHLFKNDSKISKACREIEngDWDVKDIIYAIGCVEKKKnnLKSLALVYGSVYCAS 159 Xylanibacter ru...
WP_015004950  80 DGDAIEVKKIQSKGAAIALNSSYPKSKLHSDDSKITDACRDCE--DWTAKDIIYAIGVTSDQN--LKHLWLVYGDCYAAS 155 Cycloclasticus ...
WP_015203144  82 NGDAIEVKKINKIGSGIALNSSYPTAKLYQDSPMITADCRNCE--TWTEKDIIYAIGCTPEQK--LRLLWFVYGDCYAAS 157 Crinalium epips...
WP_015121748  80 NGDAIEVKKIESLKSSIALNSSYPKSKLYFDEPMITNSCRNCE--DWQEKDIIYAIGVVKEKK--LQLLWLIYGDCYAAD 155 Rivularia sp. P...
WP_014796977  80 GGDAIEVKKTQTANTNLALNSSYPKSNINSSSPMITQSCKNCE--EWTEKDLIYCVGHTTDTT--LKSLWMVYGNIYAAG 155 Bernardetia lit...
WP_014165625  80 NGDALEIKKVESLTSELQLNSSHPKSKLYSSSPLINKHCKNCE--IWDEKDFIYTIGHIPNGTkkLSSLWFVYGSIYSAD 157 Flavobacterium ...
WP_012857486 158 KEVYERIQQTISSGITSIPNVEFTQTNELGKVKKVDPLGITDLRIRGMWHIENPTKI--FNYL-YHYDETATFQLICLMK 234 Sulfurospirillu...
WP_012159708 157 AETYEQIKEVIKDGVESINGVEFAETKELGRVNRVDPLGITYLRVRGMWGIENPFKV--FNYV-YERDSSKNFNFMALIN 233 Alkaliphilus or...
WP_013065582 160 KECYENVFNSVKQSIEESSELDLEETKELAHINAVDPLRITFFRARGMWGISHPFKVgsFADI-YRYDESN-FELMAIIP 237 Xylanibacter ru...
WP_015004950 156 REIYTRIGKTIKEGVKEIEDIEFSETKELGRVNRVDPLGITNLRIRGMWHIDNPLKV--YKDY-YEANETKTFSLACIIR 232 Cycloclasticus ...
WP_015203144 158 KETYKRISQQIAIGVNQIPNVVFSKTKELGKVNQVDPLKITDLRIRGMWSIKNPLKV--YKYInLDYDNSSQFQLNVVMR 235 Crinalium epips...
WP_015121748 156 REIYQRIRNKINSGITEIPNVEFSETKELGRVNKVDPLGITYLRIRGMWGIKNPVVV--YDYL-FENLDINTFKLIVVMK 232 Rivularia sp. P...
WP_014796977 156 HETYERIKNTISEGIDTIPNVEFAETKELGRVNKVDALGITNLRIRGMWQIQNPRKV--FSYL-HIPTEKK-FELICIIP 231 Bernardetia lit...
WP_014165625 158 EEIYLSIKNELAKSLEENQNLHFSVTNEIGRLNFVDPLKITNLRIRGMWLLQPPFKV--FKDY-YEYKKESNFQCFAFIP 234 Flavobacterium ...
WP_012857486 235 KEKYEALPLEDrnAIENLS--NLHVTLSDIRIK 265 Sulfurospirillum deleyianum
WP_012159708 234 NEKYDTLEYTD--ELEKLVgvKEGLELKEVNIK 264 Alkaliphilus oremlandii
WP_013065582 238 SDKYNSFENID--ELSELSqrIDNLTIEDTFVq 268 Xylanibacter ruminicola
WP_015004950 233 EDKFLSFNSSDidSLYS----HNDIAIKDIEIK 261 Cycloclasticus sp. P1
WP_015203144 236 QTKYLSFPEKEriKLESLS--KPGFSIADNKIK 266 Crinalium epipsammum
WP_015121748 233 EEKYLSFPYEKrmLLEGIS--NQNFTIrk---- 259 Rivularia sp. PCC 7116
WP_014796977 232 TSNYNSFDKSSknKIESIN--KVGFTIQDEKVK 262 Bernardetia litoralis
WP_014165625 235 NDKYISFPIESrnKVEN----SNNIKIENIKVK 263 Flavobacterium columnare
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