Conserved Protein Domain Family
RE_TdeIII

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pfam09520: RE_TdeIII 
Type II restriction endonuclease, TdeIII
This family includes many TdeIII restriction endonucleases that recognise and cleave at GGNCC sites. TdeIII cleave unmethylated double-stranded DNA.
Statistics
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PSSM-Id: 490434
Aligned: 14 rows
Threshold Bit Score: 208.316
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015424072   5 SADKTQKISEVVIKILYRRF-----------EEFPSDLSRnr------nAPFHKAFLQAfydkmeryqinnyELIGLSSW 67  Candidatus Cloa...
WP_014856219   4 STQQKLKVVETLKNSLRNKF-----------AEYKPEPSA---------MPFHTRLLGK-------------DRLALYQF 50  Melioribacter r...
WP_012499700   4 TQNQIHAVEETIKQSLKNRF-----------ESYNPEPAS---------MPFHTRLLGK-------------DRLALYAF 50  Chloroherpeton ...
WP_015781953   3 TPQQIANVENTLRHSLRTKF-----------QHYNPEPAV---------MPFHTRLLGK-------------DRMALFSF 49  Capnocytophaga ...
Q73P88         4 SNQQIIQVEDILKQSLRHKF-----------QNYNPEPAV---------MPFHTRLLGK-------------DRMALFSF 50  Treponema denti...
WP_013885617   4 eNRVKEKIAIEVIKVLISRF-----------DSFPEDASNir------nAPFHDAFLNAfadkldgkvpdtpFFISLASW 66  Flexistipes sin...
ABK77459       8 RNTLRSEVNAWIEDFLRQKL-----------PAVLRKNNAnr-----grMPFHEALLPN-------------AVMSGFKT 58 
BAF59305       7 PGDIEQKLKEYLAGYFHKRLiplvdkavntsKSFLDDEARrevdpegkkQPFLEAVFPP-------------EAILIKRL 73 
WP_044040219   6 KSKIEEHLREVMNRIIEKRTi---------yEPFNEDEIKr-------kNPFGYRLVPI-------------EVWKGSKF 56  Clostridium bor...
WP_004079706   8 KNAIQTVIKDLMDKIMDKVLd---------sDPFVKEEHHl-------kKPLYAALVPD-------------EIFKGSHF 58  Methanoplanus l...
WP_015424072  68 LHGLNTTLGQVFFEKVAHILSGGEKREFTSARSGALYITEEQQKAIMDIM------TDLSNRNKKPDLE---RE-LQAIP 137 Candidatus Cloa...
WP_014856219  51 IHSLITNFGLTIFEPVALSIAESKFKVAKSQYKVGDRISEDSLYVIQKIM------DNLTSATTRPDKI---KE-LELIR 120 Melioribacter r...
WP_012499700  51 IHSLNTNFGTTIFEPVAIALATSKFKVAQRQVSAGSKISIAAQFEIQKIM------DELTAANIKPDKQ---KE-IELIR 120 Chloroherpeton ...
WP_015781953  50 IHSLNTNFGTSIFEPVAKSLAESRFKVAKLQAVAGDKISEKAERVIQDIM------DNLTV-NGNPNKT---DE-IEAIR 118 Capnocytophaga ...
Q73P88        51 IHSLNTNFGTTIFEPVAVALAKTTFKSAEKQQTAGKTISSEAQNVIQTIM------DDLTTGRQLPDKI---QE-IERIR 120 Treponema denti...
WP_013885617  67 LHGLNTTLGQTFFENVAQILSDGEKREYTSKKLGNLTITKNHREKISEIA------ADLSTSTELPDLE---RE-NKLLL 136 Flexistipes sin...
ABK77459      59 ERSFSTSLGK-LFERCSVIIARECFSHVQNQHVVHGMIPGNTKNAMDTLI------DRLDQSQGYANYQtvvNEtIERMQ 131
BAF59305      74 ERPFSTKLGR-TFEEAARIIAAHYHPEAKTGCRVQGAVDAFAIARIDQMLn-----LWRENSSKKPSFPemsRQaAGVID 147
WP_044040219  57 ERSFVTSLGQGIFEQIARIIAEGSGAIAINQYQKIIRLNSWQLERIDNILenqrkkNLKTKSKNSIKLKtisEE-LEFLR 135 Clostridium bor...
WP_004079706  59 ERRFVTPFGK-VWEQLAVVAATNGMGYGTTGYRIDGMIREKRLHRIAETLnrl-ehSAKGDNKVKPDWE---KE-LAYIK 132 Methanoplanus l...
WP_015424072 138 K-AGENDLMETQGFSADVFW-IDQN-SIEAIEMKTVKPNSGEMKSEKQKILIGRTALQNKYPDKEVHFHIGFPFDPTVde 214 Candidatus Cloa...
WP_014856219 121 QsINPSKTRKTKPTVTDLFL-QDRKgNTFLIDIKTAKPNKGNFKEFKRTLLEWAAVALLNNPNDKINTLLAIPYNPYE-- 197 Melioribacter r...
WP_012499700 121 EvCQTGEMRTVKPTMIDIYL-ENENgEIFLFDIKTAKPNKGAFKEFKRTLLEWTAVLLAEKPDANPSSLIAIPYNPYE-- 197 Chloroherpeton ...
WP_015781953 119 AvCQEGKMNTVKPTKVDVWL-ESHSdELFLFDIKTAKPNKGGFKEFKRTLLEWVGCVLAENPNRKIHTLIAIPYNPYE-- 195 Capnocytophaga ...
Q73P88       121 AvCQKGEMKEVKPTKVDVKL-VSKNdEMFLIDIKSAKPNIGEFKGFKRTLLEWVAVTLAEHPKAHIHTFLAIPYNPYE-- 197 Treponema denti...
WP_013885617 137 Q-NYDGENIKAVDFSADVFF-EDED-QVIAIEIKSVKPNSGEMKGEKQKILEGKAALQKKFPKKEIYFYIGFPFDPTVdp 213 Flexistipes sin...
ABK77459     132 R---DNSAGSPVTVTSDLYL--QNNdRDIYFELKSPKPNKGQCHTMLRNSLYIHAMTRRLWPRTR--TMIGMAYNPFGd- 203
BAF59305     148 E------SKREISIQADLYV-KHSSgVSYFFEIKSPKPNKDQCLASMEKMLRLQLI----KKGEAAQTFYVMPFNPYGt- 215
WP_044040219 136 K--LDTDRYQDVNVLFDLYI-KRKDgTEEYYSLKTVKPNLDQTEAAKKDILRLMTS----EKNAQ--AYFALPYNPAGe- 205 Clostridium bor...
WP_004079706 133 K---EKGELIPVSVVCDLYVeDRNNdRKYAFELKAPLPNSDQTKVSKEKILKLHCM----EPSVIDGAYFALPYNPYGt- 204 Methanoplanus l...
WP_015424072 215 diesPCSYNKPrflnsiiCGNDFFD---PKEVLLASELWDYLSGQkDTMEFLINIIN 268 Candidatus Cloacimonas acidaminovorans
WP_014856219 198 ----PNPYARW-------TMAGMIDi--KNELMVGKEFWDFLGGK-GTYDDLLICFE 240 Melioribacter roseus
WP_012499700 198 ----PKPYSRW-------TMAGMLDl--PQELKVAEEFWDFLGGD-GAYNDLLDCFE 240 Chloroherpeton thalassium
WP_015781953 196 ----PKPYSRW-------TMAGMLDl--DNELKVAQEFWDFLAGE-NAYQDLLDCFE 238 Capnocytophaga ochracea
Q73P88       198 ----PKEYSRW-------TMRGMIDl--EYELKVAAEFWDFLGGT-GLYEALLNIFE 240 Treponema denticola
WP_013885617 214 aeekVTGYNKErflrsiiNMSKFFD---PEETLVASELWDFLSGQkNTMEQILEIIN 267 Flexistipes sinusarabici
ABK77459     204 ----GAEYNHS-------FVTGIFDm--KRQVRIGREYWDLLGGD-DTYRQLLDIFA 246
BAF59305     216 ----RDAYSYT-------FAKTYLDf--ENFVLLQEEFWDGIIGPpGTFQALVDIYR 259
WP_044040219 206 ----DKSYKSIh-----sIPYKLFDmdcDNNVLIGENLWNKIGMDdNTYSELLDIFD 253 Clostridium bornimense
WP_004079706 205 ----RENYSWS-------FPARWFDmknDEVVLIGNDFWDYIGGK-GTYEAFISAVN 249 Methanoplanus limicola
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