Conserved Protein Domain Family
RE_HindVP

?
pfam09519: RE_HindVP (This model is not part of the current CDD release)
HindVP restriction endonuclease
This family includes the HindVP (recognises GRCGYC bu the cleavage site is unknown) restriction endonucleases.
Statistics
?
PSSM-Id: 518943
Aligned: 9 rows
Threshold Bit Score: 466.856
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_015227624  27 WGKNQFNTAFPTALGCYMHQKEIDPIYL---VLNSD--LEVEKKTIKVNSIYGINPLANETFYAFENQYNCYQHLVN-NG 100 Halothece sp. P...
WP_009543215  25 WGKNQFNSSFPSALTCYMSYKNIQPVYL---TLDHK--LTVKHGKISVSSLFGLDYSSPHLFFAFERDYIPYQDIVI-GN 98  Crocosphaera su...
WP_015200041  28 WGKNQFNSSFPASLACYMHSIQVQPVYL---KLNSS--LNIIQEQITVTELFGEVPLSEKLFFAFESDYLPYRKIVI-GK 101 Calothrix sp. P...
WP_015203534  27 WGKNQFNNSFPTALACYMQSKELEPVYL---TLDQQ--LSINHTKINVSQLFGINPSSPHLFFAFESDYVPYRKTVI-GK 100 Crinalium epips...
1_pfamImport   1 WGKNQFNSSFPASLVAYMGSKGVNPIYI---CTNKK--NEVVHKTINTTDLFGVNPLGEDAYYNYEAEYYPYEQFYYaAK 75 
P44999        35 WGKNQFNSSFPVSLCCYMSSKGILANYL---SIENA---EIKCSSIDIKDVFEIEPENENTFFAFETSH----------- 97  Haemophilus inf...
2_pfamImport   1 WGKNQFNSSFPASLACYLHSKGMKAVYI---KAKPD--MKRDLQYIGIDELYGIDPLGDDIFFSFETQYTPFQKYVI-GA 74 
WP_051265193  24 mtKNNFTTEAPISFLMYIDEVLKKPTVLiegILNDKkqLSTHQAYVPLAEVFGADPC--NVGFRFEESFEGYDKYAT-NK 100 Bifidobacterium...
WP_015122891  22 WGKNCFNSSFPMALCCYMSHMNISPVYI---SIDNK--LNIKHEKESVSQLFGIPSNSSDLFFGFETVYLPYQNFVH-GI 95  Synechococcus s...
WP_015227624 101 LPRIDLVINRiqNKQLSPLRGIEIKLTALPDHTTFSESDENYGCEIVIRPDTIVYLALSIALKFQEEA--NALKDLIS-- 176 Halothece sp. P...
WP_009543215  99 LPRIDLVTIDi-SKNNLCLRGLEIKLTALPDNTTCELSDDKYGSEIVVRPPTIVYLSISIARAYQQDR--KILKDYLN-- 173 Crocosphaera su...
WP_015200041 102 LPRVDLVTQDikTNKDSCLKSLEIKLTALPDNSTYRLSDDRYGCEIVVRPDTIVYLALSIADKLQHNK--ETILEYLD-- 177 Calothrix sp. P...
WP_015203534 101 LPRVDLVTQDt-SQSDSCLRGLEIKLTALPDSSTCNLTHEQYGCEIVTRPDTIVYLALSIANNFQQSQ--QELLNYLD-- 175 Crinalium epips...
1_pfamImport  76 KEKIDLVMIN--RSTEVAASGLEVKLTTLPDNTTKDLEESEYGSEIVVRSPTILFLACSICSCYNSEKgkNRLHSILN-- 151
P44999        98 ----------------------SIKLTALPDHTTCDLTDADFGSEIVIRPDSIVYLACSLA---------EILKESLAnc 146 Haemophilus inf...
2_pfamImport  75 IPRDDLVI----LSDGQCVSSIEIKLVALPDNPTCNLSEDKFGSEIVVRPDTIIYLACSFIQSYEDNP--EALRNVIR-- 146
WP_051265193 101 ANRSDVVVVD--RETGDHKSAFEVKLVVVPNSGTARKSHDDQSCEIVVRPPSIEQLTFSIADTYGKTGmeELRKIIVK-- 176 Bifidobacterium...
WP_015122891  96 YYSADVVLSN--KITRHQFRCFEIKLTALPDNTTCSLSDSEFSCEIVVRPSTIAFVALGIVNHISNTGlvQIFSRLLS-- 171 Synechococcus s...
WP_015227624 177 -PHLEDIreNNWYDPDVMRQNSDKIISAIDAVLL------SRLSQQEPFLLQPIWKTEGKTLILHENCLDIFVWSDYALT 249 Halothece sp. P...
WP_009543215 174 -PICNFI--TDWTSPSCILPIIDEIISVIDVVIS------SCLDSQIPLIMQPIWKTEGKSAQLHDNCLDIFMWSNLAFT 244 Crocosphaera su...
WP_015200041 178 -PVFQTI--DNLTSIRSVLPKISEIVVSMDNLLL------NYLDIQSPLVMQPVWKTVGKTSKLFTNCLDMFIWSDFAFT 248 Calothrix sp. P...
WP_015203534 176 -PVCSKI--NDWSSAKSVLPVIPLLIQAIDRLLS------DNIEIQQPLVIQPIWKTQGKTFTLYENCLDIFVWSDFAFT 246 Crinalium epips...
1_pfamImport 152 -TIGSEI--KNWSEIRQVLPHYKAICKAILDVSI------DLSNKQIPLIIQPIWKTDKKLKDFADDCLDVFVWSNLSVI 222
P44999       147 mDIPNNVdhLDWSEPKQVIPLFPHILSTLNNLCS------RADTIQTPFLLQPVWKTLGKSPRLADNCLDIFIWSDVAFV 220 Haemophilus inf...
2_pfamImport 147 -DAGRNV--RDWTEAGEVLPYMDEIYWAIRRMVS------EKNECQSPIIMEPVWKTEGKSPRLADHCLDLFVWSNFGML 217
WP_051265193 177 -FLGDSIqyFKWEDESFMLRRLPQIREAAEAIAK------AKLAQQKPFAITGLWRTQGQRGLLDENCFDSFVWTNLAFL 249 Bifidobacterium...
WP_015122891 172 -PICSQI--QNWQDKNEILIHLSHFKQAMIDVISfllnqkQKIYTQQPLVIQPVWKTLGKSSTLHDNCLDTFIWSDLALI 248 Synechococcus s...
WP_015227624 250 RLFIDVCKSSSNR----QKITRHYRTAIWLAKMLVDFSKKGKIDQRGVIDNLTYDTKNDKAFAVSGKITRRYMKCDQITS 325 Halothece sp. P...
WP_009543215 245 RLFIDAAKLELNS----EKITRHKRCVVWLAKMLYDFANTSKINHTVTIDEISLNTKNDKAFALSGSRTHKYMKSPELTN 320 Crocosphaera su...
WP_015200041 249 RLFFDVAKKAAKNa---ETITRSTRSVVWLAKMLYDFASNGKINHQFIIDNYTYNTKNDKAFAINGIGTYGYMKSPQLIN 325 Calothrix sp. P...
WP_015203534 247 RLFFDISKNFTKEn--lEVIQRPMRSVVWLAKMLYEFATNGKMNHKLIIDSLTYHTKNDKAFALSGNVTRLYMNCPELIT 324 Crinalium epips...
1_pfamImport 223 QMCLRETNAD-------NDISRNQRTIIWLYKMLWDFSLYGSFNYTGIVNELAYNYKTDKAFSISGKLTNPLMRCPELTK 295
P44999       221 KFILEISNLNVNV----LSINRQTRTAIWLYKMLVDIVKYGRFNHHKIIDLCSYNTKNDKAFASSGMITNVFMKSERLER 296 Haemophilus inf...
2_pfamImport 218 NLFMPEENEEFRT------ITRHTRTMIWLFKMLQEYAEKGRFNGAKIIDTLSYNLKNDKAFASNGLRTHPIMTCAELTK 291
WP_051265193 250 QLFL---VSAANRndpnAEITRPERSLIWLVRSLYDYACQGKVKFDWAHSAITYNQQTDKAGSFAGNIPFQFMNGPRLRK 326 Bifidobacterium...
WP_015122891 249 LLPLHQINTSRRT----QNISRPARTIIWLIKMLYDFIINGQINIAQVIDTLTYDTKNDKAFAASGRVTHPFLSSPELTQ 324 Synechococcus s...
WP_015227624 326 PRIKRNEIKNIILNEGERMLSPERRFDAAILGTSEIF 362 Halothece sp. PCC 7418
WP_009543215 321 PRIKREEINNIILGGGEKLLSPERRFDAIILNTPNLF 357 Crocosphaera subtropica
WP_015200041 326 PRIKKEEIKNIILGGGQNYLSPERRFDGIILSNPEIF 362 Calothrix sp. PCC 6303
WP_015203534 325 PRVNKSEIKNIILGGGQNFLSPERRFDAVVLSNSEIF 361 Crinalium epipsammum
1_pfamImport 296 PRISKYEIKNIILGDGQKLLSPERRFDAFIVSHPELF 332
P44999       297 PIIMKSEIKNIILGGGQELLSPERRFDAIIYNSSELF 333 Haemophilus influenzae Rd KW20
2_pfamImport 292 PRITKGEIRKVILGGGQYLLSPERRFDAIIYNSPDLF 328
WP_051265193 327 PAIPRDQLDDVIPMEALDLFMPERRLDATLFygaqie 363 Bifidobacterium bifidum
WP_015122891 325 PRIKKSEIKNIILNGGQNLLSPERRFDAIIVNTPGLF 361 Synechococcus sp. PCC 6312
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap