Conserved Protein Domain Family
RE_HindIII

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pfam09518: RE_HindIII 
HindIII restriction endonuclease
This family includes the HindIII (recognizes and cleaves A^AGCTT) restriction endonuclease.
Statistics
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PSSM-Id: 286590
Aligned: 4 rows
Threshold Bit Score: 394.628
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015150672  16 WVEKIKVLSGNFSGD--TKKMEEELAAEIKIKGPSTLIDHLRLCGNIPESYKHDSSEEKLYSKYTDNLLSFAYQQMGLKS 93  Oscillatoria ac...
WP_014263271  16 WINEIKKLSGDFGAD--STRLFSELESELEVSGGQGLRSHLRLCGAIPETYNHDSSEEKLYSKYTDILASLAFTHLGVRS 93  Granulicella ma...
CDC92989      12 IVDESFKTNSIINHDiiSTNFQSMLEKNF---TDDQFAELLIYSGYIPDSYEKDSSQETLFSKLIEVLVCEWAKRMGFSS 88 
Q7W0D9        38 VVAAVVRLCADATLD--FPARCARLEAAIRACTRDQIIEHLQHGGVISECIGHDSSEEKLLAKYSDVLLACALGELGFQA 115 Bordetella pert...
WP_015150672  94 IVLTERSDAADVEAVAKSYSFVADAKAFRVSRS--AKNQKDF-KIEALDGWKQG----KDYAMVVGPIYQFP-----TRS 161 Oscillatoria ac...
WP_014263271  94 VVLVERGDAADVECFADDYEFVADAKAFRLSRT--AKNAKDF-KVPSMHKWKYH----RQHAMVICPLYQMP-----SNS 161 Granulicella ma...
CDC92989      89 RFIKQKASYEDVNIVIDNKVIVCDAKSFRLGRSqkAPNVKDFlKLEDIRKWM------ARYPNKLGGLVTYPcthdwSSG 162
Q7W0D9       116 RVLAERSDAADVYAECGDQRIVGDGKIFRLSRT--ALNPKDY-KVPSLKKWRQGagysADYSVLLAPSFQYP-----LSR 187 Bordetella pert...
WP_015150672 162 SQIYQQSSRRN--VCIFTYSHLSLLVNYALKEGSLKSETLLHEIFKTVEALNPGK----ISQDYWASVNQTMLKFSEVIR 235 Oscillatoria ac...
WP_014263271 162 SQIYRQAISDD--VCILSFSHLSLLTAFAEIASPNEARRLLKQIFKVIATLHPSK----DASAYWRAINTTFLDFDDRLK 235 Granulicella ma...
CDC92989     163 SDAYQYCSDKSapTVMLPYKYLSYLLKTKSNYSTTELSE-LWDYSRIFPNILPQKmkggNKKAYWSKIDSEILNITHTTS 241
Q7W0D9       188 SQLYAQAIDNN--VLLLSFEQLAFLVRH---HQPGRDYRPLWEYAGTRAGQDTAAw--kEARQYWHGLNQLVARLAGQTE 260 Bordetella pert...
WP_015150672 236 ELWTIEKKAASESTKLAKEEGLNFLAAER--------EKIMGMSHDEALQELIKVSKLESK----LYIINSI 295 Oscillatoria acuminata
WP_014263271 236 DLWREEKLAFVEALADAKQEALACLSTER--------SRILRMTHAEAIQALVKFRKLDAR----EKLIKSF 295 Granulicella mallensis
CDC92989     242 EELHNYILQADQLIKECIQANLERLEYQKgaiiteinNSINTETDINKLKEEIIEYKIAAEtgnlTDLINRI 313
Q7W0D9       261 QALRDSYAARRQLLQRQFDDEIAHWDAEA--------QRIRGLSREQAIAELLVSKKIQAR----VDLMRGA 320 Bordetella pertussis
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