4H7A


Conserved Protein Domain Family
CRISPR_Cse2

?
pfam09485: CRISPR_Cse2 (This model is not part of the current CDD release)
CRISPR-associated protein Cse2 (CRISPR_cse2)
Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.
Statistics
?
PSSM-Id: 518931
Aligned: 71 rows
Threshold Bit Score: 39.2616
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
4H7A_A        35 ARAAFRRSL-AFPPGAYPr---------aMPYVEPFl--AKGDWRQEEREAHYLVAALYALk-------------DGDH- 88  Thermus thermop...
Q7N8H7        35 yRAQLKRCDsVEMAmlt----------egFRALWLSlpdEISLSDNPIKLEYWATMAVALVhv---------------kn 89  Photorhabdus la...
WP_012568477  45 DRAALRRAQtVTEAcmv----------paSYALPAAlmaDARMDRHPEAETVARIAMALAT-----------------Vd 97  Rhodospirillum ...
6_pfamImport   1 ERAALRRMDsQRTGRVLPgafwk-----------llvsqEIFPEGEGETRAWEAILQGMALsadvs-------------- 55 
WP_014777593  46 EKAALARLD-------------------------------PDGELRPHQVAALARALIYAGleperwspetatenw---r 91  Thiocystis viol...
WP_015785748  21 VRADLRSGV-AIPIDRAPr---------mHAHVARW----TRDDYPYETAARYTVAALIAYkp-----------eGAIPd 75  Saccharomonospo...
Q825B7        35 ARTALRSGL-RRTLDDVPr---------mHRFVAPWl-pHDRQAPESEQRAYYAVAAMIAAqprtthtspeaaleADGAs 103 Streptomyces av...
WP_012851312 556 KRAALRSGL-GRPLDECHr---------mHKVIAAR----VPEERETVQQAYYAIAAMIASlppqareap---------- 611 Thermomonospora...
1_pfamImport   1 VLAQLRCGIvPGKQQRAWpllapfdgiegY-----------------KGEVVRTVAALYAAhp----------------- 46 
WP_025348014  41 ALADLRRPKtALTQSHFLa--------------------MSYAPSASDDEVYRLVAFLFARyh----------agASLPs 90  Nocardia nova
4H7A_A        89 QVGR---------T----LARAL----WEKAQGs-----ASVEKRFLALLEAD-RDQIAFRLRQAVALVEg----GIDFA 141 Thermus thermop...
Q7N8H7        90 NSDI---------K----LAVAAgkkggg-------nkpvvSELRFSQLQNAKtPNELLRRLCRVLQQIKgn--iSVL-- 145 Photorhabdus la...
WP_012568477  98 EDTG---------AmavrTGAALgrafavrr--qdtgkprvSGDRLRLICTADdPDEFLRLLRGAIRLLEke-kaPVA-- 163 Rhodospirillum ...
6_pfamImport  56 --------sgeapS----FARALgtadAALVG-------TTSEDRLIRMLQAQ-GERFYDLLRGMVRFCAsr-giSFSWG 114
WP_014777593  92 rwaliahgmalagHasgsLGKQLca-------------aGVSESRVTKLLTSR-GDALRQLLPRLLRLLAsk-evAPNWH 156 Thiocystis viol...
WP_015785748  76 ESPG---------N----LGASLalatHLV---------ADTRERLLHMVTSQpPSRMPVTVARVVAQLRdg-eiPVDFV 132 Saccharomonospo...
Q825B7       104 QSPQpapappygtS----LGLAFalavTASPGReremreSTAESRLNLLTRQS-ANGLHRHLPAAVGYLRel-gvPIDWA 177 Streptomyces av...
WP_012851312 612 -----psdaltgrS----FGQCLaegvGRGLLRe-----SAAEARLDQLTRQS-VDDLHRRLPAAVRILAdr-ssAVDWA 675 Thermomonospora...
1_pfamImport  47 -----------eeSasgsMGSVCrklcSDDERRdde-kpGAIGMRFQHLLAAE-TAEVCPRVVRLILRARaq-giPVNYV 112
WP_025348014  91 YGRG---------N----LGTALrkvgSGAVRGp----eDPGADRLMARISAS-RAIPERHLQHAIERMRagdtaPPSWS 152 Nocardia nova
4H7A_A       142 RLLDDLLRW---Fs-------pERHVQARWAREYY 166 Thermus thermophilus HB8
Q7N8H7       146 ALARDIEEWf-aEyeqlrpckaDRRIKVRWGMDYY 179 Photorhabdus laumondii subsp. laumondii
WP_012568477 164 DIARVVEAWh-rPa-------aRDAARRQILLSYF 190 Rhodospirillum centenum
6_pfamImport 115 DLARLCLAQnseQ---------RRKTCEHLAQDYY 140
WP_014777593 157 ELDNLLRHegqn-------eetAEAIRTQIAGRYF 184 Thiocystis violascens
WP_015785748 133 RLCDDLNAWp-wR---------RRDITRRWMQSYY 157 Saccharomonospora viridis
Q825B7       178 QLLADLIAWp-lH---------SGRISRRWLQDYY 202 Streptomyces avermitilis
WP_012851312 676 QLLLDLVWWe-dD---------RDRIARRWLQDFY 700 Thermomonospora curvata
1_pfamImport 113 QLQEDLLQWavp--------hkRRYVQERWAQQFW 139
WP_025348014 153 MLVDDLSRWt-dH---------GRPAAFEWTRDFY 177 Nocardia nova
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap