1VY8,4H3T,4AN8


Conserved Protein Domain Family
CRISPR_Cse1

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pfam09481: CRISPR_Cse1 (This model is not part of the current CDD release)
CRISPR-associated protein Cse1 (CRISPR_cse1)
Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.
Statistics
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PSSM-Id: 518929
Aligned: 75 rows
Threshold Bit Score: 162.174
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1VY8_U        10 PVRPRnGGKvQIINLQSLYCSR-DQ-WRLSLPRDDMELAALALLVCIGQ-IiapakddvefrhriMNPLTEDEFQQLIAP 86  Escherichia col...
Q8ZME7        13 PVRFKdGST-GKLAPVDLAD---ENvVDIAATRADLQGAAWQFLLGLLQcSiapkryk-nwediwFDGLHADVLHKALAP 87  Salmonella ente...
WP_013316072  11 PVVGAdGHR-TRISPRQLVN---DDiIDLACPRPDLQGAAWQLLIGLLQtAysppddd--awediwHGGLGKGWAKALTP 84  Dickeya dadantii
WP_002442771  10 PVVLEnGER-ARISLSELLD---NRiLDVAYPRADFQGAAWQMLVGLLQcTvapedeg-aweetwFDGIDPDKWQQALAA 84  Shimwellia blattae
WP_238984804  19 PFRTRdGTT-TYRAPSAVAD---PEvIDLALHRADFQGAAHQFLIGLLQtAlppqdhg-ewldrfIEPPSIAELERVFAP 93  Ectothiorhodosp...
2_pfamImport   9 TFRMRnGGE-EKLPLSAICD---PAvVDFALPRADFQGAAYQLVIGLLQtVfapedee-eweafyRNAPAQADLQAAFNR 83 
Q7N8H8        10 PFRLRdGSE-KVLPINAICD---HDvMDFALPRADFQGAACQFAIGLLQtVfapedky-qwhalyETSPDKKVLQQNFNK 84  Photorhabdus la...
CBL44342      10 CCVSFeGEK-ECISPIGLGG---AQwRDIRSARPDFRGALYQFLIGLLQtAyapedld-ewrerfANPPDTEILSAAFAT 84 
WP_014086013  13 PIQRKdGSR-DLIRPCDIADSGpNPpQELLAPRADFRAALYQLLIGLLQtAfapdnea-awrsrfVTPPSSEELAAAFAP 90  Pseudogulbenkia...
Q314I1        13 PVILAdGKR-IRIAPWELTAD--PRpVALDIPRPDFGGAMLEFLVGCMQtMcppqsrk-dwrswrKTPPQPQTLRTAMEP 88  Desulfovibrio a...
1VY8_U        87 WIDMFYLNHAE-HP-FMQtkgvka-----ndvtpmEKLLAGVSgAT----NCAFVNQPGQGEALCGGCTAIALFNQANQA 155 Escherichia col...
Q8ZME7        88 LEHAFQFGAE--TPsFMQdfepls-----gekvsiASLLPEIPgAQttkfNKDHFVKRGVTERFCPHCAALALFSLQLNA 160 Salmonella ente...
WP_013316072  85 LAPALWFGAKAkKPaFMQygvgpa-----gkvrpiADLLVNAAgEQpltfNRQHVLTHGPVEAICPHCAVLALYARQSHA 159 Dickeya dadantii
WP_002442771  85 IAPALQFGPE--KPaFLQsfdpld-----sepgtiAGLLIDAPgGNtlklNKDHFVKRDSTTQICPHCAVMALFSVQTNS 157 Shimwellia blattae
WP_238984804  94 FNTAFELDGE--RArFMQdldplkd----vkettvSGLLIDSPgANgvknNTDFFVKRGRVDAMCEDCSALALFTMQINA 167 Ectothiorhodosp...
2_pfamImport  84 VEHAFNLTGE--GPlFMQdfdpleg----aksteiSGLLIEAPgANtlrlNTDHFIKRGQCDVISPEMAAIALFTLQINA 157
Q7N8H8        85 VIHAFNVTGI--GPlFMQdfdplqt----vksttvAGLLIEAPgANglrlNTDHFIKRGIGDVMSLEMATLALFTLQINA 158 Photorhabdus la...
CBL44342      85 WQDAFHLESD--GPaFMQdlalpqe----vnqlpvLELLIDAGsASnlyfNKP--IQN---HGLCESCCAQALLTLQLNA 153
WP_014086013  91 WADAFVLDNPG-GPaFAQdldpltapelkanllslRNLLIDAGsD-----SNSYFNKPSDDEGFCPSCTAQALFTLQTNA 164 Pseudogulbenkia...
Q314I1        89 FIPHFHLLGE--RPlFMQdltlkqe---eenvmgvAALLIDSPgENaiknDTDFFVKRGRIETLCPACAAMALYTMQAFA 163 Desulfovibrio a...
1VY8_U       156 PGfgggfksglrggtpvtTFVRGID------------------LRSTVLLNVLtlprlqkq-----fpneshteNQPtWI 212 Escherichia col...
Q8ZME7       161 PAggk----------gyrTGLRGGGplttlvelqeyqgerqtpLWRKLWLNVMpqdtadlp-----lpdqcdatVFP-WL 224 Salmonella ente...
WP_013316072 160 PSg--------------rRSVHAAApamktllt---lqdhrqpLWRKLWANVIpgvhg-----------hcvseVFP-WL 210 Dickeya dadantii
WP_002442771 158 PAgga----------gyrVGMRGGGplttlavp---ddentfpLWKKLWLNVLeqetppd--------paqfplIFP-WL 215 Shimwellia blattae
WP_238984804 168 PAgga----------girVGLRGGGplttlvl----pelpdasLWSRLWLNVLtpkaltrsgqtwkvpradddtLFL-WM 232 Ectothiorhodosp...
2_pfamImport 158 PAggv----------ghrVGLRGGGplttliq----pqeldssLWQKLWLNVInldlwryp-----apdlnnptVFP-WL 217
Q7N8H8       159 PSggv----------ghrVGLRGGGplttlvv----pqqtdatLWQKLWLNVIsrsewhys-----epdltsaqVFP-WL 218 Photorhabdus la...
CBL44342     154 PSggr----------gvrTSLRGGGpltslll----pvgenatLWQKLWLNVLpqdvldqp------piktpsdVLP-WL 212
WP_014086013 165 PAggr----------girTSVRGGGplstlv------tvegltLWQQLWLNVLpldvlghe------apvrqadLIP-WL 221 Pseudogulbenkia...
Q314I1       164 PSgga----------gyrTSLRGGGplstl--------vlgetLWETVWNNVLvaestdwri---pdghdplgrILP-WT 221 Desulfovibrio a...
1VY8_U       213 k------pIKSNESIPASSIGFVRglFWQPAHIELcDpi---giGkcsCCGqESNLRYTGFLKEKFtftvnglwPHPHSP 283 Escherichia col...
Q8ZME7       225 aatrtseqANAV--TTPEQVNKLQayWGMPRRIRL-Dfat-lqsGccdICGaESDELLGFMTVKNYgvny-dgwRHPLTP 299 Salmonella ente...
WP_013316072 211 as-----sGIHDEAVTPESIAPLQsfWEMPLRIEL-Dfah-tqtGhceLCGeASEHLLTHFRGDVRaarh-ehrEHPLTP 282 Dickeya dadantii
WP_002442771 216 aptrisdkAGNM--VTPENAHPLQayWGMPRRIEL-Dfat-trpGccdLCGeEHPALLLQMRTKNYgvqy-eswLHPFSP 290 Shimwellia blattae
WP_238984804 233 aptrvsdkKGTE--VLPDGMHPLHpyWSMPRRFRL-Lfed--asCrcdICGrETTRAVRQIRAKKQgtnydgpwLHPLTP 307 Ectothiorhodosp...
2_pfamImport 218 gkthisqkAGTE--IYAHNVHELHmyWAMPRRIRL-Eidd--kpAicqLTGqKTQQSVSGYRTQNYgnnysgtwRHPLTP 292
Q7N8H8       219 aptkvsvnEGTE--IHATDVHPLHmyWAMPRRIRL-Ivek--geNickISGkYSEFTVSEYRAQNYggnytgnwSHPLTP 293 Photorhabdus la...
CBL44342     213 aatrtsddKGGQ-ETPPESVHPLQayWSMPRRIRL-Dist-ahhGdcsLCGaSDVRLFRHYYTRHGgtnytgawTHPLTP 289
WP_014086013 222 aatrnsedGRET--SCGDNAHPLQayWGLPRRIRL-Dtda-iqsGtcaVCGqSHERLYTRYRTRHGgvnysgawPHPLSP 297 Pseudogulbenkia...
Q314I1       222 vptrdskkKGTA--ILPATGHNLLhfWAMPRRFRL-HpenlsdpAacdICGtPSTTVIRQIGAKNYgnnyegawQHPLTP 298 Desulfovibrio a...
1VY8_U       284 ClvtvKKGEVEEKFLAFTTSAPSWTQISRVVVd--KiiQNENG----NRVAAVVNQFRniap----------------qs 341 Escherichia col...
Q8ZME7       300 Yra-pVKDQNAFFSVKPQPGGLIWRDWLGLSQn-nQ--TEANY----ESPAQVVKVFNarsl---------------tdv 356 Salmonella ente...
WP_013316072 283 Yr--qSVQDGSLLPVAGQLQGLAYREWPGLVL-------GEQGgeyhTLPARAVQLNHqrdp---------------lrc 338 Dickeya dadantii
WP_002442771 291 YrqalKDPSAPWLALKGQPGGLSYKDWLGLLLk-gE--DKFNR----IQPARAVRAAQqkg-----------------vv 346 Shimwellia blattae
WP_238984804 308 YrrdpKKPSEPPLSTKGQPGGLGYQHWSNLVLh--D--ADTSG----ALPALVVQDYIagkvpvvdeerrfgeeiaallk 379 Ectothiorhodosp...
2_pfamImport 293 YrwnpKKPNEEHLSIKGQPGGITYKIWDSLTF---S--ENNEG----QEAARVVDHFGklndyve----------deqsn 353
Q7N8H8       294 YkwdpKKLT-PPLSIKGQPGGVTYKIWDALVF---T--SHESG----QRCAPVVSHFYslcchfa----------elrrv 353 Photorhabdus la...
CBL44342     290 Ycl-dSNGKKPPISIKGRQAGRGYRDWLGLVL---G--NDDHQ----PDAAKVVAHFTakln----------------kp 343
WP_014086013 298 Ynh-dAKQEKPPLPVKGMAGGVAYRHWLGMVL---G--GDDGL----QRPAKVVEHFYahrepli---------trhlqr 358 Pseudogulbenkia...
Q314I1       299 Yr--eQGKGKLALSVKGASECTAYHQWLGLLYgplG--SKNKT----LVAAQCIRQFRellp----------------as 354 Desulfovibrio a...
1VY8_U       342 pLELIMGGYrnnQASILERRHDVLMFNQGWqQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSV---HET 418 Escherichia col...
Q8ZME7       357 kAGIWGFGAdfdNMKIRCWYEHHFPLLMTEg-----LIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARg----dFSF 427 Salmonella ente...
WP_013316072 339 kVGLWCFGYdlaEGKG-GWYEHHIPTWG---EVTPAILDYLPLAVQMADDAHSLLCQSVQAAGVGADk--------hCCT 406 Dickeya dadantii
WP_002442771 347 sLSLWCFAFdfdNAKVRCWYQHRLPVLNIAd--AGSFRTEIQLIVALASGSLSILKSALKNAKFENPKEAKf----dTSM 420 Shimwellia blattae
WP_238984804 380 hARLWAFGHdmdNMKPRGWYSVEMPLVAVPpAQQERLRSWVQQYTELARQVAWMVRTQVKNAWFARPSDAKg----dMSH 455 Ectothiorhodosp...
2_pfamImport 354 rPHLWVFGYdmdNMKARGWYATTLPLFSMPiEKKDAVFRRVKTLQNLSTYALTQCRTQIKSAWFNRPNEAKg----dMSF 429
Q7N8H8       354 mPRLWVFGYdmdNMKARCWYSVTVPLFFVLfEQQEKILYQVKELQKLAINMIWLCRNQIKAAWFEKPVDVKg----dTSF 429 Photorhabdus la...
CBL44342     344 aVRLWCFGYdmsNMKALCWYDSTLPVHAIPaDIQRAFTKSVKQILDSANDMATVLHKQVKAAWFRRPGDVg-----aEPA 418
WP_014086013 359 pGALWACGYkmdNAKAVAWNDSRLPLYRLPaERWMDFRLLVGELLQIAEESAALLARAVREAWGSESGDPA--------- 429 Pseudogulbenkia...
Q314I1       355 aVRVRAFGYdmdNMKARQWCEGEMPLYALDpAETAILQNEIELWLDAADKTRSNLIKALKQALFADGGRNAKADqtlLAN 434 Desulfovibrio a...
1VY8_U       419 AERHFYRQSELLIPDVLANVNFS-----Q------ADEVIADLRDKLHQLCEML 461 Escherichia coli K-12
Q8ZME7       428 IDIDFWNLTQGRFLNLIHDLENGh----------kPDERLNKWQRELWLFTRHY 471 Salmonella enterica subsp. enterica serov...
WP_013316072 407 IDVTFWQETEQFFKRLYDAIAGGm----------sVAEALKAWQNQLYLYLIGT 450 Dickeya dadantii
WP_002442771 421 VDTAFWQETEPAFRQLAAALAENprphnAq-----TCQALKAWERALHHYLLQF 469 Shimwellia blattae
WP_238984804 456 IDLQFYDTTQGAFFHALHAFQQAltevdDtp--rlPSGVAEAWYFTLKHEALAL 507 Ectothiorhodospira haloalkaliphila
2_pfamImport 430 IDALFYQRTQAPFFKAVQQIIASqhkasSl-----STDEARTWLYQLRNTCFDL 478
Q7N8H8       430 IDLTFWQQSESLFFSVVHQLIDNansdaPf----lTPEQAKHWLNTLRYLCRDL 479 Photorhabdus laumondii subsp. laumondii
CBL44342     419 VQQSFWQGSEVTFYRVLNELSALdfereAd-----LALVYRSWLLDTRRQVLEL 467
WP_014086013 430 VAQGFWQQSEAGFYRSLAEAVELpdgahRt-----TAPLFKRWLEQTRQLVLRQ 478 Pseudogulbenkiania sp. NH8B
Q314I1       435 ASTAFWSRTESAFYSLAARFVESvqqqdDaqqialAKMLRNEWANRILAATDAI 488 Desulfovibrio alaskensis G20
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