Conserved Protein Domain Family
Pilus_CpaD

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pfam09476: Pilus_CpaD (This model is not part of the current CDD release)
Pilus biogenesis CpaD protein (pilus_cpaD)
Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologs in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologs is not known.
Statistics
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PSSM-Id: 490402
Aligned: 29 rows
Threshold Bit Score: 135.942
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012564548  19 LIG-AAALGGCTHRSQEAEIVTGSLpvd-yrARHPIVIQEAAKTTEIFVGHARGGLTTAQRTDIAGLAQAWLSEGTGAIT 96  Afipia carboxid...
WP_013300123   7 LLPlLVVSAACTSPFNSEVHSLSAA------ERHPITVDQQAVTLTIPIDSTRSGLSRGDLQQLDRFVSAYRTKGYGPIT 80  Parvularcula be...
Q2W0S9        11 aLLpLLLLAAC---------DPADLtehdyrLSHPIVVEEKAAVALFARPAEGAALSDADRDRLGRLAEESARRGAGPIQ 81  Magnetospirillu...
WP_013663214   7 sIVfLLFLSGCDHTVHRLRNGSSEAe----kGTPAFVVKPTVSSISLQL-QENGSLKKSALDGLNALLRNQGRLSSQVIR 81  Marinomonas med...
Q6D929        20 VLTaVFLLAGCGWNKPINDVRMQRFdq---pALQPIAVQPSSVSVPLLVAPNGRGFLPESLKQLNIMLKDQGRLSAQTLT 96  Pectobacterium ...
Q1GU28         9 VLAlATTLAGCAGSAYSNRSl---------eSVHQPVVRNSIYQFDVAA--KDGELPPSEQGRLQGWFDAMGIRYGDRVA 77  Sphingopyxis al...
WP_013833115  13 ALAlGLGLAGCG-GIPSNRSm---------nSVHQPVVEKVNYTLDVST--GGSGLAYGEQQRLAGWFEAMGAKYGDKVY 80  unclassified No...
Q2G9F0        14 VLSlGIALSACS-SVPENRMl---------tSVHQPVVERNHFVFDLET-LPGGGLSITEQRRLAGWFESLGLKYGDKIA 82  Novosphingobium...
WP_015458232   7 tGLlSLAIAGCG---PVNRGv---------eSVNQPVVSRADYVFDVNA-DGLASPDSAEGRRLDAWFAALRLGYGDSIA 73  Sphingomonas
WP_014074683  14 aLAlCLVIAPVLVATPATARKAERGv----eSAHQPVVERTDFVFDVTG-ESDGTLGSADRSRLNAWFSALRLGYGDHVS 88  Sphingobium sp....
WP_012564548  97 IDTPTGTPNAQAASVTVRDIQNMLVAAGIPARGVKVQPYHPNDP----------RQFAPVRVRYARIIADAGPCGL-WPE 165 Afipia carboxid...
WP_013300123  81 VTAPAGTGRDLEANETAAAVRAALNDSGVAYADIQGASVTS-------------STAKEVMVSFVRYVAQGPQCGV-FDN 146 Parvularcula be...
Q2W0S9        82 ISVGALPGEEAGALAFAQTLADTLRAWGVGPVSVSVAG-GADAV----------PQPGIAQVRVPVWEAKAPECGN-FER 149 Magnetospirillu...
WP_013663214  82 LQPYTDKGNV-----FASHLKDSLLSLGVQESKLKILPIQYQATtikpdlendkQDKWDLSLTSEAMVVVTKDCSIeDSQ 156 Marinomonas med...
Q6D929        97 LIPHSASGEQ-----MAGRLATVLKNAGANAQNVKQMRRSTAS-----------GQTGDLEVISEALVVKTTRCTInDPN 160 Pectobacterium ...
Q1GU28        78 IEDPSLYGAS----SAQATVRAMVERRGLLLSK-DVPVTTGAVP------------DGHIRVVVTRASASVPGCPD-WNS 139 Sphingopyxis al...
WP_013833115  81 VDDPSANSST------RSAIEAVASRYGLLLSE-SAPITEGYVP------------AGTARVVITRSKASVPGCPD-WSA 140 unclassified No...
Q2G9F0        83 VDDPLQSKAT------LSAVDAVAGRWGLMLADGAAPVTPGYVA------------PGAVRVVVTRATASVPGCPS-WEY 143 Novosphingobium...
WP_015458232  74 LDDPAPYGHE----GARATIAAILADHGMLLGN-AAPVMPGSPV------------AGSIRVVVSRSRAEVQGCPN-WSR 135 Sphingomonas
WP_014074683  89 LASa------GGSLALRDAVGEVVGRYGLLVEG-DAPVTAGEAP------------AGGVRVVVSRSTASVPGCPS-WRD 148 Sphingobium sp....
WP_012564548 166 DLGPSvknksyFENRPYQNFGCAYQRNMAAMVANPADLVQPRAESPSNSARRS-QAFTKYRN 226 Afipia carboxidovorans
WP_013300123 147 ERAAR------FRNLSHPNFGCSSQHNLAAMIADPRDLTRAQSTTTRDGHLAS-KPINTQNt 201 Parvularcula bermudensis
Q2W0S9       150 GLNPN------YSNAPHSNWGCSIQRNKALMVQNPADLVRARETSGRDGARAT-TVLEKYGK 204 Magnetospirillum magneticum AMB-1
WP_013663214 157 AWSV-------HSYESIGTLGCANRANIAQMVSDPRDLIRGRTLDDADGVHAV-EAMTRYHE 210 Marinomonas mediterranea
Q6D929       161 QLMV-------KPYEAIGTLGCATQNNLAMIVAEPRDLIQAKALDGADGVAAV-NSIERYHK 214 Pectobacterium atrosepticum
Q1GU28       140 KSSLN------SLNATSSNYGCATNSNLAAMVADPNDLIKGTRDTGHDPVAAT-RAIQTYRT 194 Sphingopyxis alaskensis
WP_013833115 141 KSDAN------PANGLSSNYGCATNSNLAAMIADPEDLVRGATTTGETSVMSSsKAIDIYRK 196 unclassified Novosphingobium
Q2G9F0       144 NSDMT------LNNHTSTNFGCAVNSNLAAMVADKEHLIQGASGTGETVVMSStKAIDSYRA 199 Novosphingobium aromaticivorans D...
WP_015458232 136 PSQPE------FAASTMSNYGCAVNANLAAMVANPEDLVRGQEAFGSDARSVT-KAIQSYRQ 190 Sphingomonas
WP_014074683 149 KAEAD------FVGGLSDNYGCAAASNLAAMVADPRDLVEGRASDIDPTNGVSgKAIKAYQE 204 Sphingobium sp. SYK-6
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