Conserved Protein Domain Family
Pilus_CpaD

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pfam09476: Pilus_CpaD 
Pilus biogenesis CpaD protein (pilus_cpaD)
Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologs in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologs is not known.
Statistics
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PSSM-Id: 401432
View PSSM: pfam09476
Aligned: 41 rows
Threshold Bit Score: 140.936
Threshold Setting Gi: 150835272
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
goetting:OCA5_c07110  19 LIG-AAALGGCTHRSQEaEIVTGSLp-vDYRARHPIVIQEAAKTTEIFVGHARGGLTTAQRTDIAGLAQAWLSEGTGAIT 96  Oligotr...
Q1GU28                 9 VLAlATTLAGCAGSAYSnRS---------LESVHQPVVRNSIYQFDVAA--KDGELPPSEQGRLQGWFDAMGIRYGDRVA 77  Sphingo...
CCA92793              13 ALAlGLGLAGCG-GIPSnRS---------MNSVHQPVVEKVNYTLDVST--GGSGLAYGEQQRLAGWFEAMGAKYGDKVY 80  Novosph...
Q2G9F0                14 VLSlGIALSACS-SVPEnRM---------LTSVHQPVVERNHFVFDLET-LPGGGLSITEQRRLAGWFESLGLKYGDKIA 82  Novosph...
WP_015458232           7 tGLlSLAIAGCG---PVnRG---------VESVNQPVVSRADYVFDVNA-DGLASPDSAEGRRLDAWFAALRLGYGDSIA 73  Sphingo...
BAK65031              14 aLAlCLVIAPVLVATPAtARKAERG----VESAHQPVVERTDFVFDVTG-ESDGTLGSADRSRLNAWFSALRLGYGDHVS 88  Sphingo...
BAI97282              19 LALmALPLSACQTDQAAnRG---------VQSVHQPVVSNAAFTYDVQA-GPDGGLTASEARRLDDWFVSIGLGYGDQVA 88  Sphingo...
Q2W0S9                11 aLLpLLLLAAC---------DPADLtehDYRLSHPIVVEEKAAVALFARPAEGAALSDADRDRLGRLAEESARRGAGPIQ 81  Magneto...
Q6D929                20 VLTaVFLLAGCGWNKPInDVRMQRF---DQPALQPIAVQPSSVSVPLLVAPNGRGFLPESLKQLNIMLKDQGRLSAQTLT 96  Pectoba...
WP_013663214           7 sIVfLLFLSGCDHTVHRlRNGSSEA----EKGTPAFVVKPTVSSISLQL-QENGSLKKSALDGLNALLRNQGRLSSQVIR 81  Marinom...
goetting:OCA5_c07110  97 IDTPTGTPNAQAASVTVRDIQNMLVAAGIPARGVKVQPYHPNd----------pRQFAPVRVRYARIIADAGPCGL-WPE 165 Oligotr...
Q1GU28                78 IEDPSLYGAS----SAQATVRAMVERRGLLLSK-DVPVTTGAv------------pDGHIRVVVTRASASVPGCPD-WNS 139 Sphingo...
CCA92793              81 VDDPSANSST------RSAIEAVASRYGLLLSE-SAPITEGYv------------pAGTARVVITRSKASVPGCPD-WSA 140 Novosph...
Q2G9F0                83 VDDPLQSKAT------LSAVDAVAGRWGLMLADGAAPVTPGYv------------aPGAVRVVVTRATASVPGCPS-WEY 143 Novosph...
WP_015458232          74 LDDPAPYGHE----GARATIAAILADHGMLLGN-AAPVMPGSp------------vAGSIRVVVSRSRAEVQGCPN-WSR 135 Sphingo...
BAK65031              89 LASa------GGSLALRDAVGEVVGRYGLLVEG-DAPVTAGEa------------pAGGVRVVVSRSTASVPGCPS-WRD 148 Sphingo...
BAI97282              89 IATDAGYYSP----ALREGIADVVARHGMLVGE-DGTAVAGAa------------pQGAVRLIVRRAIASVPGCPD-WSD 150 Sphingo...
Q2W0S9                82 ISVGALPGEEAGALAFAQTLADTLRAWGVGPVSVSVAG-GADa----------vPQPGIAQVRVPVWEAKAPECGN-FER 149 Magneto...
Q6D929                97 LIPHSASGEQ-----MAGRLATVLKNAGANAQNVKQMRRSTAs-----------GQTGDLEVISEALVVKTTRCTInDPN 160 Pectoba...
WP_013663214          82 LQPYTDKGNV-----FASHLKDSLLSLGVQESKLKILPIQYQattikpdlendkQDKWDLSLTSEAMVVVTKDCSIeDSQ 156 Marinom...
goetting:OCA5_c07110 166 DLGPSvknksyFENRPYQNFGCAYQRNMAAMVANPADLVQPRAESPSNSARRS-QAFTKYRN 226 Oligotropha carboxidovora...
Q1GU28               140 KSSLN------SLNATSSNYGCATNSNLAAMVADPNDLIKGTRDTGHDPVAAT-RAIQTYRT 194 Sphingopyxis alaskensis
CCA92793             141 KSDAN------PANGLSSNYGCATNSNLAAMIADPEDLVRGATTTGETSVMSSsKAIDIYRK 196 Novosphingobium sp. PP1Y
Q2G9F0               144 NSDMT------LNNHTSTNFGCAVNSNLAAMVADKEHLIQGASGTGETVVMSStKAIDSYRA 199 Novosphingobium aromatici...
WP_015458232         136 PSQPE------FAASTMSNYGCAVNANLAAMVANPEDLVRGQEAFGSDARSVT-KAIQSYRQ 190 Sphingomonas sp. MM-1
BAK65031             149 KAEAD------FVGGLSDNYGCAAASNLAAMVADPRDLVEGRASDIDPTNGVSgKAIKAYQE 204 Sphingobium sp. SYK-6
BAI97282             151 KPETD------QQLGTSTNFGCGVNGNLAAMIANPEDLVRGQTTDSDLRTATSnRAISTYRE 206 Sphingobium japonicum UT26S
Q2W0S9               150 GLNPN------YSNAPHSNWGCSIQRNKALMVQNPADLVRARETSGRDGARAT-TVLEKYGK 204 Magnetospirillum magnetic...
Q6D929               161 QLMV-------KPYEAIGTLGCATQNNLAMIVAEPRDLIQAKALDGADGVAAV-NSIERYHK 214 Pectobacterium atrosepticum
WP_013663214         157 AWSV-------HSYESIGTLGCANRANIAQMVSDPRDLIRGRTLDDADGVHAV-EAMTRYHE 210 Marinomonas mediterranea
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