5T0Q


Conserved Protein Domain Family
CCT_2

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pfam09425: CCT_2 
Divergent CCT motif
This short motif is found in a number of plant proteins. It appears to be related to the N-terminal half of the CCT motif. The CCT motif is about 45 amino acids long and contains a putative nuclear localization signal within the second half of the CCT motif.
Statistics
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PSSM-Id: 401398
View PSSM: pfam09425
Aligned: 46 rows
Threshold Bit Score: 32.8145
Threshold Setting Gi: 1002283838
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5T0Q_B         3 PIAR----RKSLQRFLEKRKE-RLV-S-TSPY 27 
XP_014624771 143 PLAR----RQSLQRFLEKRIN-RLA-N-RSPY 167 soybean
NP_001118669 138 vpQR----LASLLRFREKRKG-RNF-DkTIRY 163 thale cress
XP_006651787  15 aARR----VASLMRFREKRKE-RCF-DkKIRY 40  malo sina
Q8GY55       233 QANR----KVSLQRYLEKRKDrRFSkTkKAPG 260 thale cress
XP_004244919  77 PQTV----KKSLQRFLQKRKN-RIQ-I-TSPY 101 tomato
XP_015646242 155 PAASglsmKRSLQRFLEKRKT-RAA----APL 181 Japanese rice
XP_002875606 199 PIAR----RRSLQRFLEKRRD-RFV-H-TNPY 223 Arabidopsis lyrata subsp. lyrata
XP_012704263 136 PIAR----KASLQRFLQKRKH-RIN-A-AEPY 160 foxtail millet
XP_015633146 153 PIAR----KVSLQRFLEKRKN-RIV-V-AEPL 177 Japanese rice
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