3QWU,2HVQ


Conserved Protein Domain Family
RNA_ligase

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pfam09414: RNA_ligase (This model is not part of the current CDD release)
RNA ligase
This is a family of RNA ligases. The enzyme repairs RNA strand breaks in nicked DNA:RNA and RNA:RNA but not in DNA:DNA duplexes.
Statistics
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PSSM-Id: 490358
Aligned: 132 rows
Threshold Bit Score: 31.1814
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3QWU_B             73 APFWVEEKVDGYNTRIFkygdnyyalsrggficpft--------------------------tdrlpdlidlrildenpd 126 Aquifex ae...
WP_013555517       34 REVVVTEKLDGENTTLYrdglharsldprphpsr-----------------------------hwvkalqgrvghsipqg 84  Deinococcu...
Q9RZM3             33 KEVVVTEKLDGENTSLYrddlharsldmrphpsr-----------------------------twvkaergrvahdiplg 83  Deinococcu...
WP_015891074       33 KEVVVTEKLDGENTTLYrnyiharsldskdhasr-----------------------------hwvkmlhgtisfhipeg 83  Brevibacil...
WP_014797526       41 KYIIVMEKMDGENTSIYpdylharsidstkdeshr---------------------------wierfrnailpqvqelkn 93  Bernardeti...
XP_002678251       40 QEVIITEKMDGGNCQLFqgkifarttnkeathasf----------------------------gpikqlysqfsflipdh 91 
WP_022163622       36 LKWEATEKIDGTNIRVElyfgaqyddepiecrmkikgrteaaqlp-------thltmkldslfgqinwleifptviagtt 108 Bacteroide...
WP_015333026       51 EPLLVREKVDGTNVRILitsptaytvdyivgsresllhragetmydpsvgivdwlqelrilpllaqlkpvthdvalrvvy 130 Fibrella a...
WP_003954630       43 GDVLLTEKIDGTNARIItfaggdyvigsreellhargdlihnp-----------algivetlrpladritppqngirvhy 111 Streptomyc...
CeBiTec:AFR_00645  37 GPVVGTEKVDGTNARIIlvpggdwvlgsreellcakgdlignps----------qgivaalkpvaealapvdderirvfy 106
3QWU_B            127 LVICAEVAgpenpyieesppyVKED---VQLFVFdf--mKKN-----------------------------EQGFLSQEE 172 Aquifex ae...
WP_013555517       85 WRVCGENVyarhs-----layeqLEsyfYLFSVWd-----------------------------------eGNTALSWDE 124 Deinococcu...
Q9RZM3             84 WRFCGENVyavhs-----lkyddLDgyfYLFSVWd-----------------------------------dLNVSRPWDE 123 Deinococcu...
WP_015891074       84 WRVCGENVyalhs-----iyyghLTsyfYVFSIWn-----------------------------------eNNECLSWDE 123 Brevibacil...
WP_014797526       94 WRICGENLfykht-----ifyqnLEsifLAYSIWleseiEN------------------------------QNYSLSWKE 138 Bernardeti...
XP_002678251       92 LVLFGENMygihs-----ieynnLKsyfYLFAILdl----------------------------------qDNRWYGWDE 132
WP_022163622      109 VVLYGEGYgakiqkg---gnyiknDvgfILFDVKv------------------------------------NNWWLNREA 149 Bacteroide...
WP_015333026      131 GELYGGNVgasak------qygkQHadfRIFDVT-----DYRpdqlkellaytpaelsqwreretyegivyGQPFLTHQQ 199 Fibrella a...
WP_003954630      112 VEVYGGKVgsasr----qytgD-QRlghRLFDVA-----TIPldilehplt-----------aistwrdngGQHYHTEDE 170 Streptomyc...
CeBiTec:AFR_00645 107 VELYGGKVgsaak----qyttNPARfgwRLFDVL-----ELRdhaeqlswpt---------erisawreggGQPFLAEES 168
3QWU_B            173 KMELIE-----KYnlphveilgrftaseegIKKIKEI-------------------LkrfneEGREGVVFKEDSER---- 224 Aquifex ae...
WP_013555517      125 TVRWAG-----VLgvptprvlyrgvwdearV-RALRVd-----------------------eAVMEGYVVRVAEAFayaa 175 Deinococcu...
Q9RZM3            124 VRGWAE-----RLslptprelyrgpwdeaaL-QALDPd-----------------------pERMEGYVVRVTAAIpyad 174 Deinococcu...
WP_015891074      124 TVEWAE-----LLgletapvlyrgiwkeetVKSCYTKqsv--------------------fgGEQEGYVVRVAERFpyed 178 Brevibacil...
WP_014797526      139 TKIIFD-----KIgisypkiiyegiydkkkILKNFEKykf-------------etqNkeeknRQVEGFVIRLKDSFlyed 200 Bernardeti...
XP_002678251      133 MINFINdndlsSMvpivpvly-rgtftsldEIKQWMDerik-----------dkkiSqvgggEGLEGFVIKSTQTFankd 200
WP_022163622      150 CQDIAS-----KLnipivpfigymtlpeaiEYVKAGFks----------------vIaenkdYDAEGLVLKTPHGLqfrn 208 Bacteroide...
WP_015333026      200 VRDLLG-----PTvfkgipilktnrachwiGTDAQPMshadvlerlratlplsrciIggdalGKAEGVILTDATR----- 269 Fibrella a...
WP_003954630      171 LTLLAQ-----TDtiatvp------rlatlPATALPTgidethafflhhltgtqaaLddgagGRAEGIVLRTTDR----- 234 Streptomyc...
CeBiTec:AFR_00645 169 LAAAAA-----DAgleltp------rlftvDASELPTdlektnawlgehlpatrvrLddgaqGGAEGIVLRTMDR----- 232
3QWU_B            225 --NKRAKYI 231 Aquifex aeolicus
WP_013555517      176 faRCVAKWV 184 Deinococcus maricopensis
Q9RZM3            175 fgRKVAKWV 183 Deinococcus radiodurans
WP_015891074      179 fkHSAAKFV 187 Brevibacillus brevis
WP_014797526      201 fsKSVAKYV 209 Bernardetia litoralis
XP_002678251      201 feRNIAKYV 209
WP_022163622      209 geRIITKIK 217 Bacteroides sp. CAG:633
WP_015333026      270 --SKIVKVR 276 Fibrella aestuarina
WP_003954630      235 --SATAKAR 241 Streptomyces clavuligerus
CeBiTec:AFR_00645 233 --GVIAKAR 239
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