6VT5,3QWU


Conserved Protein Domain Family
RNA_ligase

?
pfam09414: RNA_ligase (This model is not part of the current CDD release)
RNA ligase
This is a family of RNA ligases. The enzyme repairs RNA strand breaks in nicked DNA:RNA and RNA:RNA but not in DNA:DNA duplexes.
Statistics
?
PSSM-Id: 518890
Aligned: 134 rows
Threshold Bit Score: 40.7765
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6VT5_A        165 KFEVTVKLDGSSMTVYRKdd--hIGVCGRNWEL-------------------------------RETATNAQWHAARRNk 211  Naegleria gru...
Q9EN29        258 EIFVQEKLDGCNFRIIYNng--iITFGSRYTYYenknfmnyyrik----------------------------------- 300  Amsacta moore...
Q8B9F4        316 EIIVQEKLDGCNFRIICNqn--kITYGSRNTYRpdgnfmnyyrirkd--------------------------------- 360  Rachiplusia o...
9_pfamImport    2 EFWAEEKMDGERFQLHYQkl-------------------------------------------nSKFILFSRKGIDYSQk 38  
GAD98954      317 TFWIEEKLDGERMQLHMApdds--------------------------------------iqggKKFGFWSRKAKDYTYl 358 
EPE04282      367 EYWIEEKLDGERMQMHMVedda--------------------------------------vpggKRFCFWSRKAKDYTEl 408 
ENH75135      314 EFWIEEKLDGERMQVHMVqdks--------------------------------------hpggKRFCFWSRKAKDYTYl 355 
Q5YSN8        191 RVVITQKLHGTSIRI--------GNTIARRQPTwrdklaarllrvpvsqydydtvygsrkvikdPKVQQNHFYGTDVWTy 262  Nocardia farc...
WP_015195433  145 TYRAKVKLHGTNAGIQVTte-gkVAAQKRSQIItsksdnagfaa------------------------------------ 187  Stanieria cya...
WP_014108795   31 SFIGTVKLHGTNAAISYSvqkdkVYYQSRSRLIqplndnagfatwaes-------------------------------- 78   Glaciecola ni...
6VT5_A        212 mieg---------------------lqflN--Rn-LALQGEIIg------------------ESIQgnleklkgqDFYL- 248  Naegleria gru...
Q9EN29        301 -----------------dklidctnkinkFlnLkkFIIYGELIgsy--------------qnDEGInkliiknvn---yf 346  Amsacta moore...
Q8B9F4        361 ---------------letcmrslrarfndG-----FIVYGELVgwkddakttpinvidyvdqKESLk------------- 407  Rachiplusia o...
9_pfamImport   39 ffktieilsklfkgniencildgemmvwnSq-SktFKVKGEFIdv-----------------------------kNLVSs 88  
GAD98954      359 ygnglydenaa---------ltrhlkdafvdgVesIILDGEMItwdpeqdapvpfgtlkt---------aalseqrnpfs 420 
EPE04282      409 ygdglqnkrta---------ltqflegafaqgVrnFILDGEMItwdpkidkivafgtlkta--------alnaqtnphdg 471 
ENH75135      356 ygdglqdenss---------ltrhlknafasgVknLILDGEMItwdmgvdkivpfgtlktaa------lseqknksdtds 420 
Q5YSN8        263 ygqrld-----------------------glipqgFVVYGELIgwtpdgrpi--qpgytynvPEGDa--------HLYV- 308  Nocardia farc...
WP_015195433  188 ------------------wvennleyfsaLrtSenLAIFGEWCgnniqkgva--------------------------is 223  Stanieria cya...
WP_014108795   79 ------------------ietdwhyflqdiadGkdVIVYGEWCggniqrgv---------------------------al 113  Glaciecola ni...
6VT5_A        249 ------FDIYdi----------------------------------dKAQYLTPIER-QSLVKqlndngftvkhvpildd 287  Naegleria gru...
Q9EN29        347 ndnrieYYAYeikncdnknkihfidfdicqivlnaagfnvinyetikYNDFIENIKYkSIVFNhnd-------------- 412  Amsacta moore...
Q8B9F4        408 ------YYAYeiqlyggqfvpfveaqe----lltnagfntipchkylYNDFVEKLNFkSLMFPqs--------------- 462  Rachiplusia o...
9_pfamImport   89 ninnpcFVCFdilyinnkslidlsysdrlqlvkehfktslgqfhilnQSKIRNVSEFtSYFNKsle-------------- 154 
GAD98954      421 sgprplFRVFdilylngqdltrytlrdrrnalqkaikpvhrrfeihpYEEAKSAAEIePLLRKvve-------------- 486 
EPE04282      472 eaprpvFRVFdilylndqpltrytlrdrhmaleravigiprrlevhpYEKATSPDVIePMLRQiva-------------- 537 
ENH75135      421 aghrplFRVFdilylnnkpltqytlrdrhralekaikpvhrrleihsFDKATSADAIePLLREvva-------------- 486 
Q5YSN8        309 ------YRVAhvn-------------------------------pqgVITDLAWGQVvEWCAQlglktvpvltemqhraf 351  Nocardia farc...
WP_015195433  224 qlkrkiFAIFaiqigd--------------------------dlitpKKLEVRPEKIsQMLPKhedifvlpyygaaitln 277  Stanieria cya...
WP_014108795  114 tnmpkmFVMFaaeiegkhiplsslhlssdshglleradvffiddfpvYEETVDLQMPeNSINRlteltlavedqc----- 188  Glaciecola ni...
6VT5_A        288 leln-------------htaeqilamadgpslnknvkREGLVFKrl---------dgKFSFKAI 329  Naegleria gruberi
Q9EN29        413 ----------------------------------eskVEGYIIRykniry--kvkksYNLTKLT 440  Amsacta moorei entomopoxvirus
Q8B9F4        463 ------------------------------------qLEGFIIRsgnliy-klkfdyKDLNKLK 489  Rachiplusia ou MNPV
9_pfamImport  155 -----------------------------------nnCEGIVLKqvssty-kpgqrvNDWIKIK 182 
GAD98954      487 -----------------------------------eaSEGLVLKnprspy-rlnerhDDWMKVK 514 
EPE04282      538 -----------------------------------dsSEGLVLKnprsmy-rlnsrnDDWIKVK 565 
ENH75135      487 -----------------------------------naSEGLVLKnprsmy-rlnsrnDDWLKVK 514 
Q5YSN8        352 dpvdwl---------drryydegygqavplsgskklvDEGVCIRavd-------tlfPTVLKAK 399  Nocardia farcinica
WP_015195433  278 fgneeqlkaavhtinemveaveksdpwvkatfgiegiGEGLVMYpdtnsiveranytDYMFKAK 341  Stanieria cyanosphaera
WP_014108795  189 --------------------------pvahalgvtgvGEGIVWRcthp------shtDLLFKVK 220  Glaciecola nitratireducens
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap