6GKX,5LI2


Conserved Protein Domain Family
DUF2001

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pfam09393: DUF2001 
Phage tail tube protein
This is a family of phage tail tube proteins including protein XkdM from phage-like element PBSX protein whose structure adopts a beta barrel flanked with alpha helical regions.
Statistics
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PSSM-Id: 490340
Aligned: 42 rows
Threshold Bit Score: 128.486
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6GKX_A         5 ANMEARNVMSGTWGELWLDGNKVAEVKKFQAKMEFTKEDIIIAGQMGTDTKYMGYKGKGSITLYHVSSRM--HKLIGEKI 82  Clostridioides ...
WP_015759579   2 AALDSFRTINGSYGAVYENGEWLTNFNKMSAKVEIQKQELKLSGDRWVRHKVTGLKGTGTISGFKVTSRMttLNQAVTLD 81  Desulfofarcimen...
WP_013780218   2 AYLEPDRTILGSYGEVYIDGELFANFNHLEATDNYNLITFNVAGKVRTQHKTGPIEGTGTLSGFKVTSRM--LQMPH--- 76  Mahella austral...
WP_013843450   1 MALDASRVILGTYGQVFIDGVWQTNVNHLEAKVAVEKRELNLSGDDWVRHKKGPKKGTGTMSGFKVTSGM--LQRG---- 74  Desulforamulus ...
WP_009594594   1 -mLDASRVIMGTYGQAYIDGVWQTHINKLEASVELEKRELKLVGNDWTVHKNGSKKGTGTMSGYKVTSDM--ISRG---- 73  Bacillales
WP_012063693   1 mSFNPDRAFYGSFSKLLLDGEWQTNANSVEATVEMSKGELNVMGDDWTRYKKGQKNGSGTFSGYKVTSKM--IEQG---- 74  Alkaliphilus me...
WP_012047795   1 MALDASRTIHGSKGKILVDGEWQTNLTECTAEVELDKKELNLLGDDWTRYKQGSKKGTGSISGYKVSSKM--IQQG---- 74  Clostridium bot...
WP_022747893   3 EVLDASRICNGSFGKVYIDGEWQSNVNECTATEEMDKKDVVTCGSTRTKYKRGATKGSGSIKGYHITSKM--IQQG---- 76  Clostridium sac...
WP_012103598   1 mpLDSSRTIHSRYGKILMDGVEQTNVSECTAKVALDKKEINVVGDEWTRYKRGTKKGTGSFTGYHVTSDM--IKRD---- 74  Clostridium klu...
WP_012102252   3 DVLEAGRTIHGRFGEVLVDGVKQTNLQECTADVESDIKELNLLGADWTDYKAGTKKGTGTMKGYKVTSDM--IKRG---- 76  Clostridium klu...
6GKX_A        83 KRGSEPRFVAISKLNDPDSYGAERIAVKNIAFDDLTLADWEVGVKGEIEAPFTFTEYDFL 142 Clostridioides difficile 630
WP_015759579  82 NRAVTTRTELISKTDDPEAFGFERVRLKNVIFDLLQLVEWEAGNVCPEELAFTFEEWEPL 141 Desulfofarcimen acetoxidans
WP_013780218  77 ----NSRFEIISKLADPEAYGYERVRFRSCRVSQRQWANWTSGEQVTEEVQFVYDDdpel 132 Mahella australiensis
WP_013843450  75 ----FNKFELVSKLADPESYGHERVRLKNVMVDELQLANWTSGEEVKEEIPFTFEGYELL 130 Desulforamulus ruminis
WP_009594594  74 ----FTKFDIISKLDDPESYGHERVRLIRCMPDKIQLANWTAGEEVQEETSFTFEGYELL 129 Bacillales
WP_012063693  75 ----FERFELIISLEDPEAYGHERVRLKNCMADSIQLANVTSGEIIEEETPFTFEGYELL 130 Alkaliphilus metalliredigens
WP_012047795  75 ----FKRFETISSLEDPEAYGFERIRLMNCMADKLNLINLKANELVEEETPFTYEGYELL 130 Clostridium botulinum
WP_022747893  77 ----FKKFEVLTSLEDPEAYGYERIRLIGCMADKISLVNFKGGDLIEQETPFTYDDYELV 132 Clostridium saccharobutylicum
WP_012103598  75 ----FKRFELIVGLEDPESYGYESIRLLNCMADEVNLIDLKVGDLVMEESPFTFEGYELT 130 Clostridium kluyveri
WP_012102252  77 ----FKRFEIITKLNDPEAYGYESIRLKNCMATKLQLINLKAGDLVEEETPFNFSGYELL 132 Clostridium kluyveri
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