6GKX


Conserved Protein Domain Family
DUF2001

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pfam09393: DUF2001 (This model is not part of the current CDD release)
Phage tail tube protein
This is a family of phage tail tube proteins including protein XkdM from phage-like element PBSX protein whose structure adopts a beta barrel flanked with alpha helical regions.
Statistics
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PSSM-Id: 490340
Aligned: 40 rows
Threshold Bit Score: 128.486
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6GKX_A         5 ANMEARNVMSGTWGELWLDGNKVAEVKKFQAKMEFTKEDIIIAGQMGTDTKYMGYKGKGSITLYHVSSRMHKLIGEKIKR 84  Clostridioides ...
Q24LI3         3 TSFESKNVINGTFGECWLNEVQIAECKALKAEIKLDKAEIVRPRKMIKGQKVIGASAEGSITLYHVDSNMLKYITQIIKE 82  Clostridium vir...
WP_012744438   1 mAVETKRICNGTFGELWLDGDYVGECYKAQAKVEFTKEEIKQCGTFFTDNKVVGCKGTGSLTMHKVNSRMAIKVANMVRN 80  Clostridia
Q892H5         3 GHYAEENVINGTWAELWINGELLANATAFQAKISLKTADVNMLGTLAKHTKVIGYEGKGTLKLNKVDSMFIKLMADNIKK 82  Clostridium tetani
WP_015390867   1 -mpQAKQVINGTWGEVWINGEYVSEVSALQAKVTLTKVDVNFTRDLWKRSKVTGIEGKGTLKLHHVSSRMAILMKDNIKQ 79  Clostridium
WP_015891219   2 kRPDASRVINGTYGRIWVDGELWMEVDEFEAKITIAYEELNFANEPGTFQKGLGWSGEGTMKIKKIYSRVQRKMAANVRK 81  Brevibacillus b...
WP_014823305   2 aTRKSKRVINGTHGAVWINGEKLFDLESIELRVNVEWEDVFFPEETGKQRKFMGWTGEGSLVVKKIFSRGSGMLAAGVKS 81  Solibacillus si...
WP_012063550   4 SKIPSNKQINGTFGALWLDGEKLADVDSFESKININYEDVNMAEDLATHKKMTGWAGEGTLALKKVYSTGASLIGQKLKE 83  Alkaliphilus me...
WP_025435415   3 GAFRGKNQLSGSHGKLWWNKNLIAEINKFDLKASGEREDVVVGMD--IDSKLTAIKCEGSLEFKKIFSRYKKDIVDAWKK 80  Peptoclostridiu...
5_pfamImport   1 -----GKVISGTHGYFWWNNSICYEITSFEAKIKTNRETINFSGQMWDDSKLMGVSGTWTAKIKKIYSRG-KTYAEKLSA 74 
6GKX_A        85 GSEPRFVAISKLNDPDSYG--AERIAVKNIAFDDLTLADWEVGVKGEIEAPF--TFTEYDFL 142 Clostridioides difficile 630
Q24LI3        83 GREPKFTIISKLADPDAKG--VERISLTGVSFDGLSIIDWENGKEGEIEASF--TFEDFEIL 140 Clostridium virus phiCD119
WP_012744438  81 KQDVRFTLISKLADPDAYG--AERVSITGVQMDDLTLFDWEAQKPLETEAPF--TFTGYEYL 138 Clostridia
Q892H5        83 GKQTKVTIISKLSDPDALG--VERVCIKDATFEELTLADWEGKKNGEESVPF--SFSDYEVL 140 Clostridium tetani
WP_015390867  80 GKQTVCTIISKLADPDALG--AERVVLKDVTFDELTIADWEVKKNVEESLPF--TFSGYDFL 137 Clostridium
WP_015891219  82 GIYPRSSIVGKVADPEAHG--AERVALYDTTFSEFMLLKFAQKTVGSEDIPF--RFSDYEML 139 Brevibacillus brevis
WP_014823305  82 GQMPEFTITTKLADPDAYG--TERVSVTDVTFNEFLLSKIEQRALLSEELGF--EFADFDII 139 Solibacillus silvestris
WP_012063550  84 GIMPVFTMVSKLQDPDAYG--AERVSMEEVTFNEFTLAKFAQKELQTEELPF--AFADFELI 141 Alkaliphilus metalliredigens
WP_025435415  81 GEDIRFDLFVKVDDPDAIGkqEESWSIGNVWFNDFPIAVFESKQVMNEEWSFgcTFSDVEMM 142 Peptoclostridium acidaminophilum
5_pfamImport  75 GIDERLSLISKLEDPDNGG--TERVQLMSCWLDELTLQAFENGKITEDEFSG--GFVGFKYL 132
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